Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01639 ATGTTTACCGACGGACTTGATAAAAGTGCCCTTCGATGGGTTCGCGAGAAGGAAGTACCGTTTGGTTCTTCGAATATGAGGTCTCGAGCCGATCCAATCACTGGCATCAGAGCGGGTACCGGAGCAAGGGGGTTTGGATTGCCACCGCCGTCGAAATTCAGAAGTGGACATTTGCCGGGGAGTGCTATTCCAGTATCGAGAACCATATCAGGCGATGTGGACAATAGTGCATCAGCTTCAGAGAATGATATGAGTACTGATTCTGAGGAGGATGTTTATGGAACTAGATATTCTATGGACTCATCACCGCAACGGAACGGAGTACCAAATCGTTCTGGTTATAGATATGGAAATCATTTGCCGGGGAGGTTAAATAATGGGAGTGATTACTTTTTCTCTGATGTTAGTTCGTCGAGGGAAACTTTGGTGGGGGGTCATAGGCCAATGACCGAAAGGATGAGGGCTACAAATGGGAGATTCCCAACTGGGCAGAATGTTTATACAGAAGACGATTCTTCTGATTCTGCTGCGAGTTCTGAATTTTCTACTACACAAGTGGGGGGAAGTATTAATGGAGCTATACCCAGGAATAGAGCTTCAATGGCTTCAGAGGGATACTCATCAAGCCAGCCTTCTCGTATGAATGTGGGCAATGCGCCTAGAAAGCAAAATGGAAGGTTTTCGGACGACGATGATCAAGACGACGTTCCCAGTGCGCCTCCTTTTTGTGCTTCATCGCATGAAATTAAACAATGTCCTGAAAAACGCCAAGACGTGAAGCTTGATGGCGCACATGATCGTAAAACTCCGTCTGGGGTTGAATTGCAGAATGGGAAGAAGAGCAGTGACCAGTTTGTGAGACCTGTGAATTCGGAAGCTGCTGGGAGTTCAGGATTAGCTCGCCTCCCCACATATAATGCCAGTGCTTTAGGGCCGTGGTATGCTGTCATAGCATATGATGCCTGTGTGCGTTTATGTCTTCATGCTTGGGCAATGGAGAATATGGAAGCCCCGACGTTTTTGGAAAACGAATGTGCAGTACTACGAGATGCATTTGGTTTACGTCAAGTACTCTTACAGTCGGAGGATGAATTGTTGGTGAAGCGTACTTCTGAACTCGCCAATGAGGGAGCTCCCACTAAACCAAAGAAAACAATAGGCAAAATAAAGGTGCAAGTGCGGAAAGTGAAGATGGGGCTGGATCCACCAACAGGCTGTAATATTTTATCTTTAAAATCACCTGTAGTGAACCTAGAAACCATCAAGTATCAATTTTCTAGCTTTCAATCAGCAGTAGTTTCTGGATGGCACGCTGTGAATAAAATTCGTGTTGCACCGCGGATACCTCTAAACAGTTCTCTATCTAGACAAAGCATGGCATATGTGCATGCAAGCACCCAGTACATTAAGCAGGTATCCAAAGTTCTTAAAGCTGGTGTAACGACCCTGCGCAGCAGTTCAACTTCTTACGAGGTGGTACAAGAAACATACCCATGTTTGCTAAGACTGAAAAGTTTAGCTGAGGAAGATGCCGTCAAAATGCAAGCTGGATCAGGAGAAACTCATGTTTTCTTTCCTGATGGTCTTGGTGATGATCTAATAATTGAAGTTCAGGATTCCAATGCAAAGCATATTGGTCGAGCAGTCCTGCAAATAGCTGCCATTACTGACAACCCAGCAGAAAAATTACGTTGGTGGTCTATTTATCGAGAGCCTGAACATGAGCTCATGGGAAAAATTCAACTATATGTAAATTACTCAGCAAGTACTGATGATAGTCAACCGAAGTGCGGTTTGGTGGCAGAAACAGTAGCATACGACCTAGTTCTTGAGGTTGCCATGAAGGTTCAGCATTTTCAACAGAGAAACCTTTTGTTGCATGGTTCCTGGAAATGGCTTTTGACAGAGTTTGCATCATACTATGGCATTTCAGAAGTATATACCAGATTAAGATATCTTTCATATATCATGGATGTTGCCACGCCAACAGCTGACTGCCTCACCTTGGTGCACGACTTGCTCATGCCTGTTGTTATGAAGGGCCATGACAAAAGCACGTTGAGTCATCAAGAGAACCGAATTTTAGGAGAGACCAGGGTTCAAATTGAGCAGACACTTGCTCATGTTTTTGAGAATTATAAATCACTTGATGAAGCAGCTCTCTCAGGTCTTATGGAGGTGTACAGTCCTGCAACTGGTGTTGCAGCTCCTGCTATCGAACCTGCAGTTAAATTGTACACACTTCTTCATGATATTCTTTCTCCAGAGGCTCAGACTTCTTTGTGCCATTATTTCCAGGTTGCTGTGAAAAAGAGATCAAGGAGGCACTTGAGTGAGACAGATGAATATATGGGTAACAATAACGAAGGCAGTTTGGTCGATAATGTCACTATGTCCACTGCTTACCAAAAGATGAAATCAGTGTGTCTTAACATTAGGGAGGAGATATTGACTGACATTGAGATCCATAATCAACATATACTTCCCAGTTTTGTAGACCTACCAAATCTCTCTGCTTCCATATACAGCACAGAGCTTTGCAGTAGATTGCGTTCTTTCCTTATTGCTTGCCCACCAACAGGCCCCTCACCTGCAGTAGCAGAACTTGTTATTGCTACAGCTGATTTTCAGAGGGATCTTGCCAGATGGAACATTAGTCCTGTGAAAGGGGGTGTTGATGCAAAAGAATTATTCCATTTGTACATTCTGGTGTGGATCCAGGATAAGCGTCTATTGTTGCTTGAAACCTGCAGATTGGATAAGGTTAAGTGGTCGGGAGTTAGGACTCAACATTCTACAACACCTTTTGTCGATGAAATGTATGACCGATTGAAGGAAACATTGAGTGACTTCGAGATTTTCATTTGTCGATGGCCCGAGTACACCTTTGTTTTGGAACAAGCTATTGCAGATGTTGAAAAAGCATTAGTGGAGGCATTGGATAAGCAGTATGCTGATGTCTTGGCTCCTCTTAAAGAAAATTTAGCACCCAAAAAGTTTGGGCTTAAGTATGTTCAGAAACTTGCCAAACGATCCCCAAGCTCTTATACTGTTCCTGATGAGCTGGGGATTCTATTAAATTCCATGAAGAGGATGCTCGACGTTTTACGCCCAAAGATAGAAGCCCAATTTAAGCAGTGGGGTTCCTGCATTCCTGAAGGTGGAAATGTAATTCCTGGAGAACGTCTTAGTGAAGTGACAGTCATGCTTAGAGCCAAGTTCAGAAACTATTTGCAAGCAATTGTGGAAAAGTTTGTTGAGAATACGAAGTTACAAAATGCTACAAAGCTAAAAAAGATTCTACAAGACTCCAAGGAAGCTGTGATTGAATCAGAAATACGAAGTAGGATGCAACCATTGAAAGATCAGTTGGCAAACACAATAAATCAGATTCATACTGTCTTTGAGAGTCGTGTCTTTATTGCTATCTGTCGGGGTTATTGGGATCGGATGGGACGGGATGTTCTAAGCTTCATGGAGAACAGGAAAGAGAACAGGTCATGGTATAGAGGCTCACGAATTGCAGTTTCGGTACTCGACGACACATTTGCCTCACAAATGCAGCAATTGCTCGGGAATTCGCTACAAGATAAAGACCTCGAGCCACCAACCTCTATCACAGAAGTGCGATCGATGCTCTGCAAGGATTAA 3651 43.58 MFTDGLDKSALRWVREKEVPFGSSNMRSRADPITGIRAGTGARGFGLPPPSKFRSGHLPGSAIPVSRTISGDVDNSASASENDMSTDSEEDVYGTRYSMDSSPQRNGVPNRSGYRYGNHLPGRLNNGSDYFFSDVSSSRETLVGGHRPMTERMRATNGRFPTGQNVYTEDDSSDSAASSEFSTTQVGGSINGAIPRNRASMASEGYSSSQPSRMNVGNAPRKQNGRFSDDDDQDDVPSAPPFCASSHEIKQCPEKRQDVKLDGAHDRKTPSGVELQNGKKSSDQFVRPVNSEAAGSSGLARLPTYNASALGPWYAVIAYDACVRLCLHAWAMENMEAPTFLENECAVLRDAFGLRQVLLQSEDELLVKRTSELANEGAPTKPKKTIGKIKVQVRKVKMGLDPPTGCNILSLKSPVVNLETIKYQFSSFQSAVVSGWHAVNKIRVAPRIPLNSSLSRQSMAYVHASTQYIKQVSKVLKAGVTTLRSSSTSYEVVQETYPCLLRLKSLAEEDAVKMQAGSGETHVFFPDGLGDDLIIEVQDSNAKHIGRAVLQIAAITDNPAEKLRWWSIYREPEHELMGKIQLYVNYSASTDDSQPKCGLVAETVAYDLVLEVAMKVQHFQQRNLLLHGSWKWLLTEFASYYGISEVYTRLRYLSYIMDVATPTADCLTLVHDLLMPVVMKGHDKSTLSHQENRILGETRVQIEQTLAHVFENYKSLDEAALSGLMEVYSPATGVAAPAIEPAVKLYTLLHDILSPEAQTSLCHYFQVAVKKRSRRHLSETDEYMGNNNEGSLVDNVTMSTAYQKMKSVCLNIREEILTDIEIHNQHILPSFVDLPNLSASIYSTELCSRLRSFLIACPPTGPSPAVAELVIATADFQRDLARWNISPVKGGVDAKELFHLYILVWIQDKRLLLLETCRLDKVKWSGVRTQHSTTPFVDEMYDRLKETLSDFEIFICRWPEYTFVLEQAIADVEKALVEALDKQYADVLAPLKENLAPKKFGLKYVQKLAKRSPSSYTVPDELGILLNSMKRMLDVLRPKIEAQFKQWGSCIPEGGNVIPGERLSEVTVMLRAKFRNYLQAIVEKFVENTKLQNATKLKKILQDSKEAVIESEIRSRMQPLKDQLANTINQIHTVFESRVFIAICRGYWDRMGRDVLSFMENRKENRSWYRGSRIAVSVLDDTFASQMQQLLGNSLQDKDLEPPTSITEVRSMLCKD 1216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11233899 11241460 + CmaCh01G016390.1 Cma01g01639 287332

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01639 1216 MobiDBLite consensus disorder prediction 154 283 - -
Cma01g01639 1216 PANTHER PESTICIDAL CRYSTAL CRY8BA PROTEIN 1 1216 - -
Cma01g01639 1216 MobiDBLite consensus disorder prediction 201 222 - -
Cma01g01639 1216 MobiDBLite consensus disorder prediction 68 83 - -
Cma01g01639 1216 PANTHER - 1 1216 - -
Cma01g01639 1216 MobiDBLite consensus disorder prediction 157 191 - -
Cma01g01639 1216 MobiDBLite consensus disorder prediction 249 273 - -
Cma01g01639 1216 MobiDBLite consensus disorder prediction 95 111 - -
Cma01g01639 1216 MobiDBLite consensus disorder prediction 22 111 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01639 - - - csv:101206197 2145.55
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01639 Cma09g00589 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01639 Cma-Chr1:11233899 Cma03g00835 Cma-Chr3:6292397 0 dispersed
Cma01g01639 Cma-Chr1:11233899 Cma09g00589 Cma-Chr9:2718635 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g490 . Blo12g00727 . . Bpe02g00136 . Bma04g00435 Bma01g02589 . . Cma01g01639 Cma09g00589 . . . Cpe06g00450 . . . . . . . . . . . . . . . . Cone9ag1452 . . Lsi04g02273 Csa03g04484 Chy04g00216 . . . Bda11g00795 . . . . . Sed01g0609 Cmo01g01687 Cmo09g00575 . . . Car09g00520 . . Bhi09g02488 Tan01g3841 Cmetu04g2748 . Hepe01g2163 Mch11g0702 . Cla11g01416 Cam11g1473 Cec11g1503 Cco11g1498 Clacu11g1634 Cmu11g1452 Cre11g1870 . . . Cme04g00244
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004017 1 1 2 2 1 0 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 4 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01639 Cma_Chr01 FPKM 5.50619 5.446948 3.174576 3.361841 16.527 15.403668 16.677668 3.090995 2.73497 2.74453