Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01640 ATGGCTTTAATAGCTTCATTTTTTGTACTTTTAACTCTTATCAGTTCTTCTTTTGCTGCAGATGGGTCTCTCAATGATTTATTCCTTGCAAAAGCCATTTGCAAATTCACCTCAAATCCTTCTTACTGCATCTCTGTGCTTCAAAAATCCTCAGGCAATGTCTATGAATCAGGTAGGTTTTCGATGCGTCGGTCTTTGGCTAAAGCAACTACATTCTTGAACTTGATTGAGAAGCATCTTCAAAACAGTTCCACTCTACCAAAATCCGTCACTGGTGGTCTTAAAGATTGCCAATATCTTGCCCAACTAAACATTAATTTCTTGTCGAACTCTTTTCGGGCTGTCAATGGCACTGATAAAAAGCTAACCTACTCAAAAGCTGATTATATCCAGAGTCTTCTGAGTGCTATCTTAACCAACATTGATACTTGTCTTGATGGCCTAAATACCGTAGCCTCAGGTTCTAGTTTGGAGAAAGATCTCTTAGCACCACTCATTGATTGTACCAAATCATACAGTCTTTCTCTAGATCTTTTTACAAAGGGCTGGGTGCCTAGGAATAGAAACAGAACACGTGATCATCCTGTGACAAAACACCTCCGGTTTAGGAAAGGTCCGTTGCCATTGAGAATGTCAAAACATGACCGTGCTGTTTATAATTCGGTGGCGAATCGAAGAAGGCTTTCATCTTCTTCAGATGATGGAATTTTGGTTAATGGTATTGTAGTTGTGAGTCAAGATGGTACAGGAAACTTCCTCACCATCACAGAAGCTGTTAATGCAGCTCCAAACAACTCTCTTGCTGTCAATGGCTACTTCTTGATTTACATCGCAGCTGGTGTTTACCAAGAGTATGTGTCGATCCCTTCAAAGAAGAAGTACTTGCTCATGATTGGAGATGGTATAAATCAGACCATCATTACGGGCAACCAAAGCGTCGCTGACGGCTGGACTACCTTCAACAGTGCAACTTTTGCTGTGGCGGCAGAAGGATTCATGGCAGTTAACATAACCTTCCAAAACACAGCTGGAGCAATCAAAGGCCAAGCAGTTGCAATGAGAAGCGGGGCCGATATGTCCATCTTCTACAGCTGCAGCTTTGAGGGTTACCAGGACACCTTATACACTCACTCCCTAAGACAATTCTTCAGAGAATGTGACATTTATGGCACAGTGGACTTCATATTTGGAAATGCAGCTGTTGTGTTCCAAAACTGCAACATATATCCCCGTCTACCACGTTCTGGACAGACCAACATGATCACTGCTCAAGGTCGATCGGACCCGAACCAAAACACCGGTACTTCGATCCACAACTGCACAATCCGAGCCACGAGCGATTTAGCTGCAAGCAAGAGTTACATGAACAAGACATATTTGGGAAGGCCATGGAAGCAATATTCAAGAACAGTTTATATGCAGACATTCATTGATGGGTTCGTAAATCCTGCTGGTTGGGATCCATGGTCAGGGGAATACTTGAGCACATTGTATTATGCAGAGTATAATAATACAGGAGCTGGATCAAATACAAAGAACAGAGTCACCTGGCCTGGTTACCATGTCATTTCTAATGCTACTGATGCTTCTAATTTTACAGTTTCAAACTTCCTGGTTGGGGATGCGTGGCTGCCTCCAACTGGTGTGCCCTACACTGGAGGCTTCATATAA 1671 42.73 MALIASFFVLLTLISSSFAADGSLNDLFLAKAICKFTSNPSYCISVLQKSSGNVYESGRFSMRRSLAKATTFLNLIEKHLQNSSTLPKSVTGGLKDCQYLAQLNINFLSNSFRAVNGTDKKLTYSKADYIQSLLSAILTNIDTCLDGLNTVASGSSLEKDLLAPLIDCTKSYSLSLDLFTKGWVPRNRNRTRDHPVTKHLRFRKGPLPLRMSKHDRAVYNSVANRRRLSSSSDDGILVNGIVVVSQDGTGNFLTITEAVNAAPNNSLAVNGYFLIYIAAGVYQEYVSIPSKKKYLLMIGDGINQTIITGNQSVADGWTTFNSATFAVAAEGFMAVNITFQNTAGAIKGQAVAMRSGADMSIFYSCSFEGYQDTLYTHSLRQFFRECDIYGTVDFIFGNAAVVFQNCNIYPRLPRSGQTNMITAQGRSDPNQNTGTSIHNCTIRATSDLAASKSYMNKTYLGRPWKQYSRTVYMQTFIDGFVNPAGWDPWSGEYLSTLYYAEYNNTGAGSNTKNRVTWPGYHVISNATDASNFTVSNFLVGDAWLPPTGVPYTGGFI 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11242300 11244870 - CmaCh01G016400.1 Cma01g01640 287333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01640 556 Gene3D - 238 555 IPR012334 -
Cma01g01640 556 Pfam Pectinesterase 242 541 IPR000070 GO:0030599|GO:0042545
Cma01g01640 556 PANTHER PECTINESTERASE 11 554 - -
Cma01g01640 556 PANTHER PECTINESTERASE 11 554 - -
Cma01g01640 556 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Cma01g01640 556 Pfam Plant invertase/pectin methylesterase inhibitor 31 158 IPR006501 GO:0004857
Cma01g01640 556 SMART PMEI_2 25 178 IPR006501 GO:0004857
Cma01g01640 556 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 181 IPR035513 -
Cma01g01640 556 SUPERFAMILY Pectin lyase-like 238 554 IPR011050 -
Cma01g01640 556 TIGRFAM PME_inhib: pectinesterase inhibitor domain 3 152 IPR006501 GO:0004857
Cma01g01640 556 CDD PMEI-like_3 32 183 - -
Cma01g01640 556 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 181 IPR035513 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01640 Cma09g00559 CCT
Cma01g01640 Cma05g00350 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01640 Cma-Chr1:11242300 Cma17g01065 Cma-Chr17:7621802 0 dispersed
Cma05g00918 Cma-Chr5:7332386 Cma01g01640 Cma-Chr1:11242300 1.41E-94 dispersed
Cma19g01012 Cma-Chr19:8702295 Cma01g01640 Cma-Chr1:11242300 3.25E-96 dispersed
Cma01g01640 Cma-Chr1:11242300 Cma08g00442 Cma-Chr8:2494265 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01640 K01051 - csv:101205879 994.186