Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g01644 | ATGTTCCCAAAACCCCACCATCAACCACCGCCCCATTTCCAGCCCTTTCCCCGCCCCTTCTCCGTCGCGGCCACTCCGCCACCGCGCGATTCTTCCACCGCCGCCGATGAAGATTCCACCACCGGCCACTCGCCTCTCACGCGCGCTATGCTCCCCAAAGAACCGGCCTCCGGCGGCGACGGAGCTTCTATCGAGGTCGTTCGCCGTCCCCGTGGTCGACCTCCGGGATCCAAAAACAAGCCGAAGGCAGCCGCCGTTGTCGTCGCTGCACGCGACGCCGAGGCGGCGATGAGTCCTTATGTGCTCGAAGTTCCTGGCGGCAGTGATATCGTCGAGGCTATTTCCCGATTCTGCCGCCGCAGAAACACAGGGCTCTGTATTCTCAACGCTTACGGAACCGTCGCCGATGTCACACTCCGGCAGCCGTCCTCATCTCCGGTGGCGACCGTCACTTTCCATGGACGATTCGATATCCTTTCCGTCTGCGCTACTTTTGTTCCTCATACGACGTCGTTTCCAATCCCTAACGGATTCACCATCACGCTAGCAGGGCCGCAGGGCCAGATCTTCGGCGGTTTGGTTGCTGGAGCTTTAATCGGAGCCGGAACCGTCTTTGTAATAGCTGCCTCATTCAACAATCCCTCCTATCAACGGCTTCCATCAGAGGACGAGGTCAGAAAATCAGGCTTCAGCGATGTCGAAGAAGATCACTCTCCACCGATCTCCGGTGGAAAAGATAGCGAAAACACCAACGCCGCAGCCGATACCTGCGGCCTGCTGCCGATGTACAGTACTCACTCTTCCTCCGACGCAATATGGTCCCGACAACCAGCGGCGCCGCCGCACCACCGCCAGTACTAA | 861 | 59.23 | MFPKPHHQPPPHFQPFPRPFSVAATPPPRDSSTAADEDSTTGHSPLTRAMLPKEPASGGDGASIEVVRRPRGRPPGSKNKPKAAAVVVAARDAEAAMSPYVLEVPGGSDIVEAISRFCRRRNTGLCILNAYGTVADVTLRQPSSSPVATVTFHGRFDILSVCATFVPHTTSFPIPNGFTITLAGPQGQIFGGLVAGALIGAGTVFVIAASFNNPSYQRLPSEDEVRKSGFSDVEEDHSPPISGGKDSENTNAAADTCGLLPMYSTHSSSDAIWSRQPAAPPHHRQY | 286 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11260554 | 11261414 | - | CmaCh01G016440.1 | Cma01g01644 | 287337 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g01644 | 286 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cma01g01644 | 286 | MobiDBLite | consensus disorder prediction | 1 | 83 | - | - | |
Cma01g01644 | 286 | Gene3D | - | 98 | 235 | - | - | |
Cma01g01644 | 286 | MobiDBLite | consensus disorder prediction | 218 | 253 | - | - | |
Cma01g01644 | 286 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 27 | 279 | IPR014476 | GO:0003680 | |
Cma01g01644 | 286 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 99 | 213 | IPR005175 | - | |
Cma01g01644 | 286 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED | 27 | 279 | - | - | |
Cma01g01644 | 286 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 96 | 223 | - | - | |
Cma01g01644 | 286 | MobiDBLite | consensus disorder prediction | 220 | 242 | - | - | |
Cma01g01644 | 286 | ProSiteProfiles | PPC domain profile profile. | 94 | 234 | IPR005175 | - | |
Cma01g01644 | 286 | MobiDBLite | consensus disorder prediction | 26 | 46 | - | - | |
Cma01g01644 | 286 | CDD | DUF296 | 99 | 211 | IPR005175 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01644 | Cma-Chr1:11260554 | Cma05g00550 | Cma-Chr5:2687553 | 5.55E-87 | dispersed | |
Cma01g01644 | Cma-Chr1:11260554 | Cma12g00196 | Cma-Chr12:911548 | 1.77E-89 | wgd | |
Cma01g01644 | Cma-Chr1:11260554 | Cma09g00592 | Cma-Chr9:2739782 | 5.48E-166 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g01644 | - | - | zju:107421268 | 294.664 |