Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01644 ATGTTCCCAAAACCCCACCATCAACCACCGCCCCATTTCCAGCCCTTTCCCCGCCCCTTCTCCGTCGCGGCCACTCCGCCACCGCGCGATTCTTCCACCGCCGCCGATGAAGATTCCACCACCGGCCACTCGCCTCTCACGCGCGCTATGCTCCCCAAAGAACCGGCCTCCGGCGGCGACGGAGCTTCTATCGAGGTCGTTCGCCGTCCCCGTGGTCGACCTCCGGGATCCAAAAACAAGCCGAAGGCAGCCGCCGTTGTCGTCGCTGCACGCGACGCCGAGGCGGCGATGAGTCCTTATGTGCTCGAAGTTCCTGGCGGCAGTGATATCGTCGAGGCTATTTCCCGATTCTGCCGCCGCAGAAACACAGGGCTCTGTATTCTCAACGCTTACGGAACCGTCGCCGATGTCACACTCCGGCAGCCGTCCTCATCTCCGGTGGCGACCGTCACTTTCCATGGACGATTCGATATCCTTTCCGTCTGCGCTACTTTTGTTCCTCATACGACGTCGTTTCCAATCCCTAACGGATTCACCATCACGCTAGCAGGGCCGCAGGGCCAGATCTTCGGCGGTTTGGTTGCTGGAGCTTTAATCGGAGCCGGAACCGTCTTTGTAATAGCTGCCTCATTCAACAATCCCTCCTATCAACGGCTTCCATCAGAGGACGAGGTCAGAAAATCAGGCTTCAGCGATGTCGAAGAAGATCACTCTCCACCGATCTCCGGTGGAAAAGATAGCGAAAACACCAACGCCGCAGCCGATACCTGCGGCCTGCTGCCGATGTACAGTACTCACTCTTCCTCCGACGCAATATGGTCCCGACAACCAGCGGCGCCGCCGCACCACCGCCAGTACTAA 861 59.23 MFPKPHHQPPPHFQPFPRPFSVAATPPPRDSSTAADEDSTTGHSPLTRAMLPKEPASGGDGASIEVVRRPRGRPPGSKNKPKAAAVVVAARDAEAAMSPYVLEVPGGSDIVEAISRFCRRRNTGLCILNAYGTVADVTLRQPSSSPVATVTFHGRFDILSVCATFVPHTTSFPIPNGFTITLAGPQGQIFGGLVAGALIGAGTVFVIAASFNNPSYQRLPSEDEVRKSGFSDVEEDHSPPISGGKDSENTNAAADTCGLLPMYSTHSSSDAIWSRQPAAPPHHRQY 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11260554 11261414 - CmaCh01G016440.1 Cma01g01644 287337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01644 286 MobiDBLite consensus disorder prediction 1 24 - -
Cma01g01644 286 MobiDBLite consensus disorder prediction 1 83 - -
Cma01g01644 286 Gene3D - 98 235 - -
Cma01g01644 286 MobiDBLite consensus disorder prediction 218 253 - -
Cma01g01644 286 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 27 279 IPR014476 GO:0003680
Cma01g01644 286 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 213 IPR005175 -
Cma01g01644 286 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 27 279 - -
Cma01g01644 286 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 223 - -
Cma01g01644 286 MobiDBLite consensus disorder prediction 220 242 - -
Cma01g01644 286 ProSiteProfiles PPC domain profile profile. 94 234 IPR005175 -
Cma01g01644 286 MobiDBLite consensus disorder prediction 26 46 - -
Cma01g01644 286 CDD DUF296 99 211 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01644 Cma-Chr1:11260554 Cma05g00550 Cma-Chr5:2687553 5.55E-87 dispersed
Cma01g01644 Cma-Chr1:11260554 Cma12g00196 Cma-Chr12:911548 1.77E-89 wgd
Cma01g01644 Cma-Chr1:11260554 Cma09g00592 Cma-Chr9:2739782 5.48E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01644 - - zju:107421268 294.664