Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01646 ATGAAAGGGCCTGATTTCGCTATTGCAATAGCTGCTGCCCTTCCTTCTTTTTCCCGCGCCCCCCTCCCTTCTCCCTCCAAATCTCTGCGGCTTCATTTCTCGATCCTTTTCAGGTTTCCAATGGAGAACTTGGACGGGAAATCAGCAGATTCTTCGCAATCTGTTCGTGTTGCTGTTAATATTAGGCCTTTGATTACACCGGAGCTTATGGTTGGATGTACTGATTGTATTACCGTTGTGCCTGGAGAACCTCAGGTTCAAATTGGATCTCATGTTTTCACATATGACAATGTGTACGGTAGTGCTGGATCGCCATCTTATGCATTATACGACGACTGTGTCGCTCCATTAGTTGACGCACTATTTCAGGGTTATAATGCCACTGTTCTGGCTTATGGACAGACGGGGTCTGGAAAGACTTACACAATGGGAACAAATTATAGTGGTGAAGGAAGTAAGGATGGAGTAATACCGAAAGTAATGGAAAATATATTTAAAAAGGTCAAGAAAATGGAGGATTCTACAGAATTCTTGATCAGAGTTTCATTTATTGAGATATTCAAGGAAGAAGTGTTTGATTTGCTCGACGCAAATGCTTGCCCCAACACAAAGGCTGAAGGAACAAAGCCTTATGCTCCTCCGCGAGTTCCAATACAAATAAGAGAAACTGTGAATGGTGGGATTACGCTTGTTGGTGTCACTGAGGCAGAGGTTCAGACCACAGAAGAAATGACGTCTCACTTGTCCTGTGGTTCCTTAGCACGTGCAACTGGAAGTACCAACATGAATAGTCAGTCAAGTCGATCACATGCCATCTTTACGATTACCATGGAGCAAAAGAAAAAGCCTAGGCGAGGCATGACTCATGATGATTCATGTGACGACATTCTTTGTGCAAAGCTACATTTGGTGGATCTTGCAGGATCTGAAAGAGCAAAACGAACAGGTGCAGACGGCATGCGCTTTAAAGAAGGTGTTCACATCAACAAAGGCCTTTTGGCTCTCGGTAATGTCATAAGTGCATTGGGAGATGAGAAGAAACGAAGAGAAGGGTGTCATGTTCCCTACCGTGATAGCAAATTAACACGTTTGCTACAGGATTCTCTTGGAGGCAACAGCAGAACGGTGATGATTGCTTGTGTTAGTCCTGCCGACTCAAATGCTGAGGAGACCCTGAACACGCTAAAATATGCTAATCGTGCTCGCAATATTCAAAATAAAGCAGTTATCAACCGAGATCCTGTAGGAGCTCAGATACAGAAAATGCGAAGTCAAATTGAGCAGTTGCAAGCTGAGCTTTTATTCTACCGCGGTGATGCAGGTTTACCATATGAGGAGCTTCAGATGCTAAAGCACAAAATATCATTACTTGAAGCAAGCAATGGTGAGTTGTTGCGGGAGCTTCAAGAACGCCGAGTCACTTGCGATCATTTGTCTCAACGTGCTATTGATGCTCAGGTTGAGAAAGACAAGCTTGCCATGATAATTGAATCAGTGCGGAATGGAAAATCTTTAGATGAGATTGAATCTAACTTCGATAAGGATTGTGAGTTAGTCAAGAGTTATGTTTCAAAAATTCAAGAGCTAGAAGGGGAGGTACTGCGTTTGCAAAGCTTTAACAACCCAAAACTCAGTCGATATGCGGATCTAGTGGAGTCTGATGATGATAGGCCCAACTCTAGCAATATCTTATTTCCATGTTCAAATGAGTATTCGTCGGACTATGATCCTAAAGCTGTAGATATTTCAGATGGAATCGAAGATCATGAGAAGGAGATTGAGCATTCAACAATGCAAGAAAGATTGGATAGGGAGCTAAAAGAATTGGATAAGAAACTTGAGCAGAAGGAGGCTGAAATGAAACGGTTTTCTGGTGCGGATACCTCTGTTCTTAAACAACATTATGAAAGGAAGGTCCACGAACTGGAACAAGAAAAGAGAGCGTTACAGAAAGAGATCGAGGTACTCAAATGTAATCTTTCGAGCATATCTTCTACATCTGATGATGGTGCACAAAAATTGAAGCAAGAATATCTTCAGAAGTTGAATTTCCTGGAAACCCAGGTCTCGGAGTTGAAGAAGAAACAGGATGCACAAGCTCAAATATTGAGACAGAAACAAAAGAGTGATGAGGCAGCAAAAAGGTTACTGGATGAGATCCACAGAATTAAGTCCCATAAGGTTCAACTTCAACACAAGATTAAACAGGAATCTGAGCAATTTAGACTATGGAAGGCTTCGAGAGAGAAGGAAGTTCTCCAGCTGAAGAAGGAGGGCAGGAGAAATGAATATGAGATGCATAAGCTCTTAGCTTTGAATCAAAGGCAGAAAATGGTCTTGCAACGAAAGACCGAAGAAGCTGCTCAGGCAACAAAAAGGCTTAAAGAACTTTTAGAATCTCGAAAGGCAGCACGTGAAACTTCCGGTGGCGGAGCAAATGGTCCTGGAATTCAGGCTCTAATGCAGAATATTGAGCATGAACTTGAAGTCACAGTAAGAGTGCATGAAGTTCGTTCTGAATATGAGCGGCAAATGGAAGAGAGGTCGAAGATGGCCAATGAATTGACGCGGCTTAAGGAGGAAGAAGAATTGATTAGGGGAGCTAATTTAAGTGATTGTACTCGAACAATGTCACCCGGTGCGAGAAATTCAAGAATTTTTGCTCTTGAGAACATGCTTGCTACGTCATCCAGCTCTCTGGTTTCTATGGCCTCACATTTATCAGAGGCAGAAGAACGCGAGCGCGTTCTTGGTGGCGGTAGGGGACGTTGGCATCAAGTTCGCTCTCTTGTAGATGCAAAGAATATAATGAATTTTTTGATGAATTTAGCATCCTCTTCAAGATGTTTGCTATGGGATAAAGAGTTTGCTTCTAGGGAGAAGGATTCAGAAATTAGGGAGTTGAAGCAAAAAATAGTGAACCTTAGCGGCATGCTTAAGAAATCAGAAGCCCAAAAGGCTGAACTTATTCATCAGAACTCAGCTTTGAAGAAGCATTCCATGCGAAGCACTTCAGATCAGATTAATAGTGGGGGACATAACTATAATTTACGCAAGCAGGAGCAGCGGAGTTCTATCATTTTATTGGCAGACATGGATACCTCGGACTCAGATTACTCGGATCGTTATTCAGATGATAATGATGCCAATTACAATTGGGAGAAATCAATGAAACGACGACACACCAGAAAACAAATCATTAAAGCTAAGGGCCGTTCGAGTATGGACGTCTCAGATGACACAAACAATGTAAACAATGCAAACTTCAACTCGGATAGTTCTGGTGATGGGGTAGTTCGTGTGAGTGAGGCCACTACTGCTATCACTGCTTGCTGCCTTTGCAGCAAATTCTCTTCTTGCAAGACAACGAAGTGCCAATGTAGAGCCAATGGTGGTGCGTGTGGCTTGTCATGTGGTTGTATTCCATCTAAGTGTTCAAACAGAGGCAGTAAAAGCGAGCGGGACGAGTCGATGCAACCGGACTTAGTCGGGGATGTTGAAAATGCTACTGAAAATGGTGAAACCAATGAGGAGAGTCGTGACCTTGTTTTGAATGGTGCAAGGTTGCTTCAGAATGCATTGGCTGAGAGGCCAAGTGAGGCTCCTCCTGCTGAAGATGGTGGCGCAAAAAGAAAGCCTCTATCAGACATAGGAAACACATTGGCGAAATCGAAGTCAAACAAGCCAAACCAGAGAAAGAAATGGAGAAAATCTACAATTCAACTCATTCCTACACCACAACCATCTTCCCAACCAGAAATACCTGAGCCCATCCAGAAGACAGAAAACGACTCGAATGAGGTTGCCAACATCCCGTTGAAACTTCCCCGAGCGATGCGATCCGCCACCGCCGCTGCCAATGGCAGCAACCTACTGAGGGAGAGGAACTCCGATCAGCCGGAAGATTCAGTTGGCGGGAACAAAGAACATGAACTTATTGTTCCAAAAAGAGTGGATGAGAAAGAGAACTGCAACCGTTAA 3981 43.36 MKGPDFAIAIAAALPSFSRAPLPSPSKSLRLHFSILFRFPMENLDGKSADSSQSVRVAVNIRPLITPELMVGCTDCITVVPGEPQVQIGSHVFTYDNVYGSAGSPSYALYDDCVAPLVDALFQGYNATVLAYGQTGSGKTYTMGTNYSGEGSKDGVIPKVMENIFKKVKKMEDSTEFLIRVSFIEIFKEEVFDLLDANACPNTKAEGTKPYAPPRVPIQIRETVNGGITLVGVTEAEVQTTEEMTSHLSCGSLARATGSTNMNSQSSRSHAIFTITMEQKKKPRRGMTHDDSCDDILCAKLHLVDLAGSERAKRTGADGMRFKEGVHINKGLLALGNVISALGDEKKRREGCHVPYRDSKLTRLLQDSLGGNSRTVMIACVSPADSNAEETLNTLKYANRARNIQNKAVINRDPVGAQIQKMRSQIEQLQAELLFYRGDAGLPYEELQMLKHKISLLEASNGELLRELQERRVTCDHLSQRAIDAQVEKDKLAMIIESVRNGKSLDEIESNFDKDCELVKSYVSKIQELEGEVLRLQSFNNPKLSRYADLVESDDDRPNSSNILFPCSNEYSSDYDPKAVDISDGIEDHEKEIEHSTMQERLDRELKELDKKLEQKEAEMKRFSGADTSVLKQHYERKVHELEQEKRALQKEIEVLKCNLSSISSTSDDGAQKLKQEYLQKLNFLETQVSELKKKQDAQAQILRQKQKSDEAAKRLLDEIHRIKSHKVQLQHKIKQESEQFRLWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEAAQATKRLKELLESRKAARETSGGGANGPGIQALMQNIEHELEVTVRVHEVRSEYERQMEERSKMANELTRLKEEEELIRGANLSDCTRTMSPGARNSRIFALENMLATSSSSLVSMASHLSEAEERERVLGGGRGRWHQVRSLVDAKNIMNFLMNLASSSRCLLWDKEFASREKDSEIRELKQKIVNLSGMLKKSEAQKAELIHQNSALKKHSMRSTSDQINSGGHNYNLRKQEQRSSIILLADMDTSDSDYSDRYSDDNDANYNWEKSMKRRHTRKQIIKAKGRSSMDVSDDTNNVNNANFNSDSSGDGVVRVSEATTAITACCLCSKFSSCKTTKCQCRANGGACGLSCGCIPSKCSNRGSKSERDESMQPDLVGDVENATENGETNEESRDLVLNGARLLQNALAERPSEAPPAEDGGAKRKPLSDIGNTLAKSKSNKPNQRKKWRKSTIQLIPTPQPSSQPEIPEPIQKTENDSNEVANIPLKLPRAMRSATAAANGSNLLRERNSDQPEDSVGGNKEHELIVPKRVDEKENCNR 1326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11267130 11277230 + CmaCh01G016460.1 Cma01g01646 287339

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01646 1326 Coils Coil 419 439 - -
Cma01g01646 1326 MobiDBLite consensus disorder prediction 1295 1326 - -
Cma01g01646 1326 Pfam Kinesin motor domain 87 404 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma01g01646 1326 Coils Coil 447 467 - -
Cma01g01646 1326 MobiDBLite consensus disorder prediction 996 1014 - -
Cma01g01646 1326 Gene3D Kinesin motor domain 49 437 IPR036961 -
Cma01g01646 1326 PANTHER KINESIN-LIKE PROTEIN KIN-4C 48 1307 - -
Cma01g01646 1326 Coils Coil 780 807 - -
Cma01g01646 1326 SMART kinesin_4 52 412 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma01g01646 1326 Coils Coil 595 626 - -
Cma01g01646 1326 Coils Coil 834 861 - -
Cma01g01646 1326 MobiDBLite consensus disorder prediction 1254 1268 - -
Cma01g01646 1326 Coils Coil 632 659 - -
Cma01g01646 1326 Coils Coil 965 999 - -
Cma01g01646 1326 CDD KISc_KIF4 54 405 - -
Cma01g01646 1326 MobiDBLite consensus disorder prediction 995 1014 - -
Cma01g01646 1326 MobiDBLite consensus disorder prediction 1195 1326 - -
Cma01g01646 1326 Coils Coil 675 715 - -
Cma01g01646 1326 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 438 IPR027417 -
Cma01g01646 1326 ProSiteProfiles Kinesin motor domain profile. 54 404 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma01g01646 1326 PRINTS Kinesin heavy chain signature 124 145 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma01g01646 1326 PRINTS Kinesin heavy chain signature 260 277 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma01g01646 1326 PRINTS Kinesin heavy chain signature 354 375 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma01g01646 1326 PRINTS Kinesin heavy chain signature 300 318 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma01g01646 1326 ProSitePatterns Kinesin motor domain signature. 299 310 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cma01g01646 1326 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 48 1307 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01646 - - - cmos:111446675 2388.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01646 Cma-Chr1:11267130 Cma01g01823 Cma-Chr1:12084107 0 dispersed
Cma05g00544 Cma-Chr5:2644224 Cma01g01646 Cma-Chr1:11267130 8.54E-13 dispersed
Cma09g00025 Cma-Chr9:131662 Cma01g01646 Cma-Chr1:11267130 3.24E-10 dispersed
Cma12g00402 Cma-Chr12:2077005 Cma01g01646 Cma-Chr1:11267130 4.91E-26 transposed
Cma01g01646 Cma-Chr1:11267130 Cma12g00200 Cma-Chr12:943844 4.94E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g515 . . . . Bpe02g00139 . . . . . Cma01g01646 . . . Sed05g1562 . Cpe07g00170 Bhi04g01382 Tan02g2480 Cmetu04g1739 . Hepe10g0431 . Lcy13g1480 . . . . . . . Cone4ag1297 Cone7ag0858 . . Lsi04g02279 Csa03g04492 . . . . Bda11g00799 . . . . . . Cmo01g01696 . . . . . . . . . . . . . . Cla11g01423 Cam11g1479 Cec11g1509 Cco11g1505 Clacu11g1640 Cmu11g1458 Cre11g1876 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009556 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01646 Cma_Chr01 FPKM 11.563311 12.063296 1.059674 1.067283 22.873764 22.737591 24.117514 0.589119 0.362542 0.415007