Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01647 ATGTTGCAGAGAGCTGCTAGTAATGCGTATTCATGGTGGTGGGCCAGTCACATCAGGACGAAGCAATCGAAATGGCTCGAACAGAATCTCCACGATATGGAGGAAAAGGTTGAAAACATGATGAGAATCATTGAAGGCGATGGCGATTCTTTCGCAAAAAGAGCTGAAATGTACTATAGGAAGAGGCCTGAACTTGTAGAACACGTAGAAGAATCCTTTAGGGCATACCGAGCTTTAGCAGAGAAATACGAGCATCTTTCGAAAGAGTTTCAAGGGGCAAATCGAATGATAGCTTCGATCTTCCCAGAACGAGTTCATTACACGATTGATGATGACGATGATGATTGTGAGGTAGATTTCTTTTCTCGAGAATCTTTCGGTGGCAAAGGTCCTAACCAGTTTGAATCGGGTGCCTCACCAAAACTAGGAGTACCAGAAGTTCCAAAGTTTCCCGAGAAGGGGTTTTCTAGGAGTCCTTCGATGATGAGAAAAACAAAACTCAAGAGAAACGCAAGCAGTGCTAGTAGTAAAGCTGCTTCAACTCCAAAATCAGGGCTTACCAAGGATGAAGCTCTAGAAGAAATCAGTAAGCTACATAAAGAAATTCTAGCTCTTCAAACCGAAATGGAATTCGTTAAGAGCTTGTATGAACGCGAGGGCGAAAGATATTGGGACATGGAAAACAGTATCACACAAATGCAAAAAAGAATCAGTAGCTTACAGGATGAGTTCGGCATTGGCTCGATTATCGAAGATAACGAAGCTCGAACGTTAATGGCTACCACAGCTCTGAACGCCTGCCGAGAATCTCTAAGTAGGTTGCAAGAAGAACAGGAGAAAACAGTTGAAGAAACAAAACTAGAGAATGGCAGAATCAAGAAAGTGGTTAAAGATTTTGAGAGTCTCAAATGTAAGTTCATATCAAACCCAACAGAGAATCATGAATCCATTGATTTACAAGAAGATTTAAGCATTGAAACAGAATTGACAACCTCAAATCAACTGGCCGCTTGCACAGCTGAAAACAAACATGATATACAGCTTCTAAGTCAGAAGATCAGAGAGTATCTGGAAATGAATTCAAATAGCTCATTCACCATTTCTGAATTGGCTGAGAAAATCGATGAACTTGTAAACAAGATTGTCACACTTGAAACTACAGTTTCTTCTCAGACATCTCTTGTTAGACGACTTAAATCAGAAACAGATGAACTCCAAGCAAACGTCCAACAATTGGAACAAGAAAAGGAGATTCTTGTGGAGAATTCAGAGACCATGAAGAAGAAGATACAAGAATTGGAGGCCGAATTAGCCAGAGTTAACAATCTAAATCAGAATGTTCAAATACAGAACAACAATCTTCAAACCGAGTTCACCGAAGCGAGTTGTAATCTCGATCACTTATTTGGTAAATTACAGACAATGGAAATGAATGAGGCTGACAATTCTGAGTTCATACAAGATGTAATGATGGTTGATCCTGATGTGAAAACAACAACGTTTTCAACAGATACAGGATTGAAACTGGGAGAGATTCCAAGCATTGCAGCTGAAGAAGCAGCTAAGGAATCAATACATGAGGAAGAACATGAAAGATCCAAGGCTCAAACAGATGATACTCATGATTTGGAGGAAGAAAAGCATCCGACCTTGAGGCAGATGTTCTTGAAAGGATTAGAAGACAGAGAAAAGATTTTACTGGAGGAGTATACATCAGTGCTGAGGGACTACAAAGATGTAAGAAACAAGCTAAGCGAAGTCGAACAGAAGAATCGCGACAGCATCTTCGAGTTGGCGATGCAGGTTAAAGAACTAAAAGATGCCATTTCCACCAAAGATGATGTTATAAAATCATTAGTGAATAATGCAGATATAGATGAAGAAACTAATGCAAGAGATGAGGAGCGGGAACAGGAGCAGGATCAGGAGCTGGAGCAGTCCCAAGAAACCATTCATGAGGCTCCTAGCTCCTTGTACTCCGAATCCTCAAGTCCATACTTAGAACAAGTTTCGACTCCCGATTTCTACGGCAAACCGAGCGCCGATTCCACAGAAGAAAGCTACAAATTGTTGAGAAATGCAAGCTTACCAAGAAAAGAGACAGCAAAGAGGAAAGCAAGGAGTGTGAGTAGTAAATCCATTATCATCATGTCACCTATGGAAGAACGAATCCGCTCGCATATCGACGGACAACTAGAGATGAATCTCGAATTCTGGCTGCGATTCAGCACGGCAGTTCATCAGATTCAAAAGTTCCAGACTTCAATCCAAGACCTTCAAGCAGAGCTGCAAAAGTTAAGAGAAGACATGCTAGAAGGAAGTGTGAAACATCAACAGTCGTCGATCGAATCCGACGCTCGACCTATCTACACACACCTAAGAGAGATCCAAACTGAACTATCCCTCTGGTTGGAACATAGCGCAGTATTGACAGATGAAGTAAGCAGCCGATACAAATCCTTAACCGACATACAAAACGAAATATCAAGAATCACAGAAGAAGAATCAAGTGAAGAAGGATCAGAAATGAACGATTATCAAGCTGCAAAGTTTCAAGGTGAAGTTCTCAACATGATACAAGAAAACAGGAAGATTGCTGATGAGTTAGAAGTCGGTCAGGATCGAGTTCGAGCTCTACAAGCTCAAATCGAGAAGTCTTTACTAAGACTTGATCAAGAATTTGGCATTTCAGCAGACAAGAGCATTCAATCTGAATCGAAAGCGTTGACCCGAACCCGAATTCCTTTACGATCGTTCTTGTTCGGGATCAAGTTAAAGAAGCAAAAGCCATCGCTGTTCTCGTGTGCAAGTCCACAACTAGAGAAACAATACAGTGATCTAGCTAAAGGGCCGCTACCTCAGTGA 2865 41.26 MLQRAASNAYSWWWASHIRTKQSKWLEQNLHDMEEKVENMMRIIEGDGDSFAKRAEMYYRKRPELVEHVEESFRAYRALAEKYEHLSKEFQGANRMIASIFPERVHYTIDDDDDDCEVDFFSRESFGGKGPNQFESGASPKLGVPEVPKFPEKGFSRSPSMMRKTKLKRNASSASSKAASTPKSGLTKDEALEEISKLHKEILALQTEMEFVKSLYEREGERYWDMENSITQMQKRISSLQDEFGIGSIIEDNEARTLMATTALNACRESLSRLQEEQEKTVEETKLENGRIKKVVKDFESLKCKFISNPTENHESIDLQEDLSIETELTTSNQLAACTAENKHDIQLLSQKIREYLEMNSNSSFTISELAEKIDELVNKIVTLETTVSSQTSLVRRLKSETDELQANVQQLEQEKEILVENSETMKKKIQELEAELARVNNLNQNVQIQNNNLQTEFTEASCNLDHLFGKLQTMEMNEADNSEFIQDVMMVDPDVKTTTFSTDTGLKLGEIPSIAAEEAAKESIHEEEHERSKAQTDDTHDLEEEKHPTLRQMFLKGLEDREKILLEEYTSVLRDYKDVRNKLSEVEQKNRDSIFELAMQVKELKDAISTKDDVIKSLVNNADIDEETNARDEEREQEQDQELEQSQETIHEAPSSLYSESSSPYLEQVSTPDFYGKPSADSTEESYKLLRNASLPRKETAKRKARSVSSKSIIIMSPMEERIRSHIDGQLEMNLEFWLRFSTAVHQIQKFQTSIQDLQAELQKLREDMLEGSVKHQQSSIESDARPIYTHLREIQTELSLWLEHSAVLTDEVSSRYKSLTDIQNEISRITEEESSEEGSEMNDYQAAKFQGEVLNMIQENRKIADELEVGQDRVRALQAQIEKSLLRLDQEFGISADKSIQSESKALTRTRIPLRSFLFGIKLKKQKPSLFSCASPQLEKQYSDLAKGPLPQ 954
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11278587 11281924 + CmaCh01G016470.1 Cma01g01647 287340

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01647 954 Coils Coil 395 457 - -
Cma01g01647 954 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 10 90 IPR011684 GO:0003779
Cma01g01647 954 PANTHER PROTEIN NETWORKED 2A 1 947 - -
Cma01g01647 954 Coils Coil 367 387 - -
Cma01g01647 954 Coils Coil 264 288 - -
Cma01g01647 954 MobiDBLite consensus disorder prediction 628 642 - -
Cma01g01647 954 Coils Coil 625 650 - -
Cma01g01647 954 MobiDBLite consensus disorder prediction 127 187 - -
Cma01g01647 954 Coils Coil 223 243 - -
Cma01g01647 954 PANTHER PROTEIN NETWORKED 2D 1 947 - -
Cma01g01647 954 Coils Coil 570 590 - -
Cma01g01647 954 Coils Coil 188 208 - -
Cma01g01647 954 MobiDBLite consensus disorder prediction 649 670 - -
Cma01g01647 954 MobiDBLite consensus disorder prediction 165 183 - -
Cma01g01647 954 MobiDBLite consensus disorder prediction 520 546 - -
Cma01g01647 954 MobiDBLite consensus disorder prediction 626 684 - -
Cma01g01647 954 Pfam KIP1-like protein 11 84 IPR011684 GO:0003779
Cma01g01647 954 Coils Coil 749 776 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01647 - - - cmax:111480817 1763.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01647 Cma09g00594 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01647 Cma-Chr1:11278587 Cma16g00745 Cma-Chr16:3991947 2.24E-74 dispersed
Cma01g01647 Cma-Chr1:11278587 Cma09g00594 Cma-Chr9:2754794 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g520 . . . Bda03g00455 Bpe02g00141 . . Bma01g02583 . . Cma01g01647 Cma09g00594 . . . Cpe06g00455 . . . . . . . . . . . . . . . . . . . Lsi04g02281 Csa03g04495 Chy04g00206 . . . . . . . . . Sed05g1559 Cmo01g01699 Cmo09g00580 . . . Car09g00525 . . Bhi09g02499 Tan01g3853 Cmetu04g1542 . Hepe01g2171 Mch11g0710 . Cla11g01426 Cam11g1481 Cec11g1511 Cco11g1507 Clacu11g1642 Cmu11g1460 Cre11g1878 . . . Cme04g00236
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007068 1 1 1 1 1 0 2 1 1 2 1 1 2 1 1 2 1 0 2 1 1 1 3 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01647 Cma_Chr01 FPKM 0.315968 0.35538 0.201646 0.234387 0.388705 0.229621 0.26464 0.291289 0.163779 0.4354