Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01650 ATGACGGTTGAGCCAAGAGTTGATGACCCAAATGACCAATTTCCGGTTGGAATGCGTGTTCTCGCCGTCGACGACGACCCCACTTGTCTTTTGATCTTGGAGACTCTGCTTCGCCGGTGCCACTATCATGTCACTACGACCAATCAGGCTATTATGGCACTCAAGTTATTGAGAGAAAACAAGAACAAGTTTGATGTGGTTACCAGTGATGTCCACATGCCTGACATGGATGGATTTAAGCTGCTTGAGCTTGTGGGGCTGGAGATGGACCTTCCTGTTATTATGCTGTCTGCAAATGGAGATCCCAAGCTTGTGATGAAAGGGATTACTCATGGAGCATGTGATTACTTGCTGAAACCTGTTCGCATTGAGGAGCTAAAGAACATTTGGCAGCATGTTATCAGGAGAAAGAAATTTGATCCAAAGGATCAGATGAATTCTATCAATCAGGCCAAGCTTGATTCTGAGAATGGTGAAGTAGCTGATCCAAGTGGGAAGTTTAAGAAGAAAAGGAAAGATCAAAACTATGATGAGGATGATGACCAGGATTGTAACGGGCAAGAGGACGATGACTCATCGACCCAGAAGAAGCCTCGTGTTGTTCGGTCTGTTGAGCTGCATAGGAAGTTCGTAAATGCTGTTAACCAGTTGGGCATAGATAAGGCAGTGCCCAAAAAGATTTTGGACTTGATGAACGTTGAAAAGCTCACAAGAGAAAACGTTGCTAGTCATCTTCAGAAATATAGGCTTTATCTCAGGAGAATCAGCTGCGTAGCAAACCAACAAGCTAACATGGTGGCTGCATTGAGCAGCGCCGACCCTTCGTATACGAGAATTGGTTCTCTTAACGGTATCGGGAATTTCCGTTCCTTCACTGGACCTCCACCGTTTCCCAACACTGCTCATAGATCTATCCCGACCACCGGGATGCTCGGTCGATTGAATACTCCTGCTTGTATGGGCATGAATGGCCTTTCTTCCCCAGGAACCGTTCCACTGGAGTCTACATTTCAGCCCAGACCCCGCAGTGCGAATATGTTCCAGGGAATGCCAGAGTCATCAGGACTTGATCAAGTACAACACGTTAAGCACGGCACCGTGGACAATCTCTCTCGTGCTTTTGATCAGAGAACAGTCTTGGAAAGTTCACGTCCTTCGGTAGATAGTATTCGATGCACGGGTGACGATTGGTCGAAGGCTGATCGTTCATCTAGGATGCTCTTGCATATAGGAAATTGTGTTTCTGACATTTCTTCAATATCTACTCAATCCCATGATTCAAGAACAGATACTCAACGTCAAGCAGCCACGAATAGCAATCGATATGATCGAGTAATCACAAAGGTTCCTGTTCAAGATTGGAATGATCTAGAGGACGCCTATTACGACACGACCGTGGCCTGTAGCTCATCAAATTCATTCATACCAGTGAATGGTGCTGCAGAGACGTTACCAAAGCGTTTCGAAAATCAGAACACAATCTTCTCTAGAAGCAAGGATTTTAACATGCCTAGTCGAGCAAATGATCTCGATCGTGCAATGGTGGATCACGATCAATTCAAGAAATCATCTATCGAGACATCGATCATGTTGAAACAAGGACTTTTGTATGATCATCAGCAAAAAATGCAAGCTAGATTTTGTTCAAGTAACTGTGGTTCCTTGGAAGACATAGCATGTGCAATGATGAAACAGAACCTTACTAGAGGGATACCCTAA 1719 44.74 MTVEPRVDDPNDQFPVGMRVLAVDDDPTCLLILETLLRRCHYHVTTTNQAIMALKLLRENKNKFDVVTSDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDQMNSINQAKLDSENGEVADPSGKFKKKRKDQNYDEDDDQDCNGQEDDDSSTQKKPRVVRSVELHRKFVNAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLRRISCVANQQANMVAALSSADPSYTRIGSLNGIGNFRSFTGPPPFPNTAHRSIPTTGMLGRLNTPACMGMNGLSSPGTVPLESTFQPRPRSANMFQGMPESSGLDQVQHVKHGTVDNLSRAFDQRTVLESSRPSVDSIRCTGDDWSKADRSSRMLLHIGNCVSDISSISTQSHDSRTDTQRQAATNSNRYDRVITKVPVQDWNDLEDAYYDTTVACSSSNSFIPVNGAAETLPKRFENQNTIFSRSKDFNMPSRANDLDRAMVDHDQFKKSSIETSIMLKQGLLYDHQQKMQARFCSSNCGSLEDIACAMMKQNLTRGIP 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11291445 11298562 + CmaCh01G016500.1 Cma01g01650 287343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01650 572 SUPERFAMILY Homeodomain-like 194 254 IPR009057 -
Cma01g01650 572 SMART REC_2 18 130 IPR001789 GO:0000160
Cma01g01650 572 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Cma01g01650 572 CDD REC_typeB_ARR-like 20 134 - -
Cma01g01650 572 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 563 - -
Cma01g01650 572 MobiDBLite consensus disorder prediction 144 200 - -
Cma01g01650 572 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Cma01g01650 572 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677
Cma01g01650 572 MobiDBLite consensus disorder prediction 159 178 - -
Cma01g01650 572 PIRSF RR_ARR_type-B 1 569 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cma01g01650 572 SUPERFAMILY CheY-like 17 141 IPR011006 -
Cma01g01650 572 Gene3D - 17 153 - -
Cma01g01650 572 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 563 IPR045279 GO:0009736
Cma01g01650 572 Gene3D - 193 256 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01650 Cma-Chr1:11291445 Cma06g01548 Cma-Chr6:9701157 1.02E-100 dispersed
Cma12g01172 Cma-Chr12:9241331 Cma01g01650 Cma-Chr1:11291445 1.45E-53 dispersed
Cma11g00402 Cma-Chr11:1979240 Cma01g01650 Cma-Chr1:11291445 4.53E-58 transposed
Cma01g01650 Cma-Chr1:11291445 Cma10g00483 Cma-Chr10:2210896 3.47E-122 wgd
Cma01g01650 Cma-Chr1:11291445 Cma11g00478 Cma-Chr11:2318504 7.38E-135 wgd
Cma01g01650 Cma-Chr1:11291445 Cma09g00420 Cma-Chr9:1816748 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34354 PF00072 Response_reg 3.60E-22 CL0304 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01650 - K14491 cpep:111788137 1045.03