Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01660 ATGGAGGATAGCAATGTTCTGTTTGGTAAATATGAGATCGGGAAGTTGCTTGGGAAGGGAACTTTTGCGAAGGTGTATTATGGAAAAGAATTGGAATCTGGTGAAAGTGTGGCGATTAAGGTTTTAAACAAGAATCAGGTCAGGAAGGAAGGGATGATGGAGCAGATCAAGCGCGAGATCTCCGTTATGCGACTTGTTCGTCATCCGAACATCGTTGAGTTGAGAGAAGTAATGGCGACGAAAACGAAGATCTTCTTTGTAATGGATTATGTTCGCGGTGGTGAACTTTTTGCCAAAGTTGCAAGAGGCAAACTCAAGGAAGATGTGGCTCGGAAGTATTTCCAGCAGTTAATCAGCGCCGTCGATTACTGTCACAGCCGTGGAGTATCTCACCGCGATTTGAAGCCAGAGAATCTGTTGCTGGATGAGAATGGAGATCTCAAGATCTCCGACTTTGGACTCTCCGCCTTGCCGGAACAGCTTCGGAACGACGGCCTTCTCCACACGCAGTGCGGTACTCCGGCGTACGTCGCACCGGAAGTACTAAGAAGAAAGGGCTATGACGGGGCGAAAGCCGATATCTGGTCTTGCGGTGTGATTTTGTATGTTTTGTTAGCAGGATTCCTTCCATTTCAGGATGAGAACATCATAACGATGTTCAAGAAGGTTTTCAAGGCCGAATTCGAGTGTCCGCCATGGTTCTCCGCCGAATCGAAGCGTTTAATTTCAAAAGTCCTCGTCGTAGATCCAGAAAGACGAATCACAATCGGCGAAATGACGCGAGTTCCTTGGTACCGGAAAAATTTCTCAAGATCGCTCTCATTCACGATGAAGGAAATAATCGCAGAGAAAACAGAGGATTTCGATTCCGATAGTCCAAAACTATCGACGCCAAAATTCTTCAATGCGTTTGAGTTGATATCGTCAATGTCATCCGGATTCGATCTATCTAACTTATTCGAGAACAAAACGAAGGCAGGATCCATGTTCACATCGAGATGCACGGTGCCGACGATCATGGAGAAGATCGAGACGGTGGCGAAGAGATTAAGCTTCAATGTACCGGAAGTGAAAGATTTCAAGCTCCGGCTGCAAGGTCAGACGGAGGGGCGAAAAGGCAAGCTGTCAATGACGGCGGAAGTGTTCGAGATAGCGCCGGAAGTTGCCATAGTGGAATTTTCAAAGTCGTCCGGCGATACTCTGGAATATTCGAAGTTCTGTGAAGAAGACGTTCGTCCGGCGTTGAAAGACATCGTTTGGACGTGGCAAGGTGATTGTGCCGCTAACGTTGACGGACATAACGGCCGATTTGACGGTGAAGAACGTTTGTGA 1332 47.22 MEDSNVLFGKYEIGKLLGKGTFAKVYYGKELESGESVAIKVLNKNQVRKEGMMEQIKREISVMRLVRHPNIVELREVMATKTKIFFVMDYVRGGELFAKVARGKLKEDVARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENGDLKISDFGLSALPEQLRNDGLLHTQCGTPAYVAPEVLRRKGYDGAKADIWSCGVILYVLLAGFLPFQDENIITMFKKVFKAEFECPPWFSAESKRLISKVLVVDPERRITIGEMTRVPWYRKNFSRSLSFTMKEIIAEKTEDFDSDSPKLSTPKFFNAFELISSMSSGFDLSNLFENKTKAGSMFTSRCTVPTIMEKIETVAKRLSFNVPEVKDFKLRLQGQTEGRKGKLSMTAEVFEIAPEVAIVEFSKSSGDTLEYSKFCEEDVRPALKDIVWTWQGDCAANVDGHNGRFDGEERL 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11355900 11357231 + CmaCh01G016600.1 Cma01g01660 287353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01660 443 SUPERFAMILY Protein kinase-like (PK-like) 7 291 IPR011009 -
Cma01g01660 443 SMART serkin_6 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01660 443 Gene3D Transferase(Phosphotransferase) domain 1 91 272 - -
Cma01g01660 443 PANTHER - 1 432 - -
Cma01g01660 443 Gene3D Kinase associated domain 1, KA1 296 421 - -
Cma01g01660 443 ProSiteProfiles Protein kinase domain profile. 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01660 443 Pfam NAF domain 298 354 IPR004041 GO:0007165
Cma01g01660 443 Gene3D Phosphorylase Kinase; domain 1 2 90 - -
Cma01g01660 443 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Cma01g01660 443 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 25-RELATED 1 432 - -
Cma01g01660 443 Pfam Protein kinase domain 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01660 443 ProSiteProfiles NAF domain profile. 296 321 IPR018451 GO:0007165
Cma01g01660 443 CDD CIPK_C 302 416 - -
Cma01g01660 443 CDD STKc_SnRK3 10 264 - -
Cma01g01660 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01660 Cma-Chr1:11355900 Cma14g01055 Cma-Chr14:5577570 0 dispersed
Cma01g01660 Cma-Chr1:11355900 Cma10g00478 Cma-Chr10:2169579 0 wgd
Cma01g01660 Cma-Chr1:11355900 Cma11g00469 Cma-Chr11:2275952 3.08E-180 wgd
Cma01g01660 Cma-Chr1:11355900 Cma09g00414 Cma-Chr9:1766505 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68297 PF00069 Pkinase 7.60E-74 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01660 - - csv:101213773 804.283