Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01662 ATGGCGTTTCTGCAATTATTCCTTTTGCGAGGGAATTTGGTGATCGGAGCTTCGTTTTATGCTTATTTGGATCTCGAGCCGAATATCACAATGGCCTTATTTCGCAAATTCTTTTATCGGAAGCCACCGGACGGGCTTTTAGAGATATCCGAAAGGGTTTATGTTTTCGACTGCTGCTTTACAACGGAGGTTTTGGAAGAAGACGAATACAAAGTCTATATTGGAGGTATCGTGGGACAACTTCGTGAAAGTCTCACCGATGCTTCATTCATGGTGTTCAATTTCCGAGAGGGGGAGAGTCAAAGCCTCATCACTAATATATTATCTATGTATGATATGACTGTCATGGACTATCCTCGACACTATGAAGGTTGCCCTCTTCTCACCATGGAGATGATCCACCACTTCTTAAGATCCTGTGAAAACTGGCTCTCACTTATGCAACAAAATGTACTTTTGATGCACTGTGAACGAGGGGGATGGCCGGTCTTGGCTTTCATGTTGGCTGCTCTTTTGATTTATAGGAAGCAATATGCTGGGGAGCAGAAAATTTTGGACATGATCTACAAGCAAGCACCTCGGGAGCTTTTGCAGTTGATGTCACCTCTTAATCCATTGCCTTCGCAATTGAGGTATCTTCAATATGTATCAAGGAGAAATGTGGGATCAGAATGGCCTCCGCTTGACAGGGCGCTTACTCTAGACTGCATAATTATTAGACTTATTCCTAATATGGATGGTGAAGGTGGTTGCCGCCCAATATTTAGGATATATGGACAGGACCCCTTTATGGCTGGTGATCGAACCTCCAAAGTATTGTTCTCAACACCCAAAAGGAGTAAACTTGTTCGCCAGTATAAGCAGTCCCAGGTTGTGTGTTCATCCATACAAAACTACTATTCAGAGTTCCTAGAGCTCCTTGTTGATTGTGAGCTAGTTAAAATTGATATCCATTGCCATATCCAAGGTGATGTTGTTTTTGAATGTATAAGTTTGGACAATGATCTGGAAAGGGAGGAGATGGTGTTTCGAGTTATGTTTAATACGGCATTTATAAGGTCAAATATTTTGATGCTTAACCGGGATGACATCGATATCTTATGGCATGCAAAGGATCAATTTCCAAAGGATTTCAGAGCAGAGGTTCTTTTCTCAGAGATGGATGCTAACGCATCGCGTATTTCAATTGAATTGCCGAATATTGAGGAGAAAGATGGTCTTCCAATTGAAGCATTTGCTAGAGTTCAAGAGATCTTTAGCAATGTGGAATGGCTAAGCCCCAAGGCAGAAGCAGCTCTTACTGCGCTTCAGAAAATGACAGCTTCAAATTTTCTTCAAGAGAAACTTATTAGTTTCAACTCTTTAGACAGAAACCAGTTGCTTGACTTATCTTTAGAAAAACTAATATCGGAATCAGAGACATCTGAAGACAATATTAGAAGTCCCCAATTGAAGATACAAAAAAATCAATCCGAGCCGTCTTCTGAACTATATCGCACTGAAAGATCAGTGAGATCGAAGATTGAAACCCCAGAATTGCAGGTTGCTCTCGAACTACCACCTCAGACTAAAATCGTTACCCAAAGAATACCTCAACCTTCCATGTCTACACCAGTCTCCTTTCCTAGTTCTGTGCAAGGTTCACCTTCCCCAAAATTAAGATATCCGAGTGCACCTTCTGCTCCGGGCAATACAGCATTATTCCACGATCATTCCAAATTTAGTGGTAAGGAAGTCATACATCCAGCGACAATATCTTCACCATCATCTTATCGCTTGACTCCAAGTGCTCTAGATTCATATAAATATATTCAACCCGGCAAGCATCCTATTTTGCCTCCCCCGCTGGCACTGGAGCCAAGTTCTACATTAGAAAGACCTTCTACCACCACATCAACTTCAACCATTTCTGATCCATTTGTACTCCGCCAACTTTCTTTGAAACCTATTAAACCTTCAATTTCTCAACCGTCTCAAACCACGTCACTAGGGAGAAGTCAATTATTACCATCTTCATTACAACCAACGCCTAGCTCTTTTCTTAGGAAGTCCACACCTTCATTCAATGAGAGTTTACCTTCGATATCCTCTTCTTCTTTATTAAGATCATGTCCATGTTCTTGTGCCAAGCAATCATTTTGTCTTCCCACTCCTCCCTCTCCTCCCATCTCTCATCTTGATTCATCTTCGTTTTTAGTAACATCTCCATCTTTTGGCAGGATGAATGGTTCATTTTCCCCATCTCCACCACAACCTTCTTCTACAACAATACTATTGTCCTCGACAATGACATCAATTCCAGTTGTTCTTCAATCTTCTTCGTCTAATGATCGTTTAGTTTCTTCTCAGTTGCCTAAAAAGAATTTGTCAATTGTCCCTCCCCCTCCACTATCTCCTCATCCTCCTCCTCCATGCTCTAGCCCCAACTTGGGCGCTAGTGTTGTCTTGCCAACATCGGTGCCCCCACCGCCACCTCCACCTCTGGCCCCACCCTTGCCCCCATCTTTGAGTTCATCGACTTGTGGTTCTAGTACCATGTCTTTAGGGCCACCGTCGCCACCACCTCCTCCTAGTCCTGCACCACAGGGTTCTACCACGGTAGTCAGGAACTTGAAGGTTGTACCTGGCCCTCCACCTCCCCCATCTCCTCCCTCTCCTAGATCTTCCCCAGATCCTAGTAATGTATCTTTAGCACCGCCTCCTCCTCCTCCTCCTCTTCTGCCTAGTCGTGCACCAAATGTTTCTGCAACAACGCATGTCTCTGGCCCCCCTCCTCCTCCTCCTCCACCTTCTGCCAATTCAGGATCCACCTCAAGTCCAGGTGTTGTAACGTCAGCTCCACCTGCCCCACCTCCTTCAGGTTTTTCAACGACGGGACCTGCTCCACCTGCACCCCCTCCTTCCTCACAGTCTCACGCTGGCACTAATAATGGCAACATACCTTCTATTCCTGGACCACCTTCCAGTGCTTTACTTGCAAAGGGACGAGGCCTTGGACGTTTGAACTCCAAAAACGTGTCTCAACCTAAAAGGTGCAATTTGAAGCCTTACCACTGGTTAAAATTAACGAGGGCCATGCAAGGAAGCTTATGGGCTGAGTCACCAAAGAACGATGAAGCTTCCAAAGCTCCGGAGTTTGACATGTCCGAACTTGAAAGTCTTTTCTCTGCAGCTGCACCAAATTCGGAGTCTGGAGGTTCTGGTAGAAATTCAAATCGCCGAGCCTCAGGGCCAAAACCAGAAAAAGTTCAGCTGATTGAACTTCGACGGGCCTATAATTGTGAAATTATGCTCTCTAAAGTTAAGATTCCTTTGCCTGATATGATGTGTTCAGTCCTTGCATTGGATGACATGGCGTTAGATGTGGATCAGGTTGAGAACCTAATAAAGTTTTGTCCAACAAAAGAAGAAATGGAATTACTTAAGGGGTACACTGGGGACAAGGACAACTTGGGAAAATGTGAACAAGTCCCACGAGTTGAGGCCAAGCTAAGAGTTTTTTCTTTCAAGATACAATTCGGGTTGCAGGTCTCTGACCTTAGATATAGTCTGAATACTGTCAATTCGATCAGAAATTCGATAAAGTTGAAAAGGGTAATGCAAACTATTCTTTCGTTGGGTAATGCTTTGAACCACGGAACGGCTAGAGGTTCTGCTATTGGATTTCGGCTTGATAGTCTCCTCAAACTCACTGATACGCGAGCCAGAAACAATAAGATGACTCTCATGCATTATCTATGTAAGGTGATCGCTGAAAAGCTACCAGAACTTATAGAATTTCCAAAGGACCTTGTGCATTTGGAAATTTCTACGAAGATACAACTGAAATATTTGGCAGAGGAAATGCAAGCCATAAGCAAAGGGCTTGAGAAGGTTGTTCAGGAATTGTCTAATTCAGAAAACGATGGGTCCGTTTCAGAAACTTTTTGCCGGACTTTAAAAGACTTCCTTTCTCATGCCGAGGCCGAAGTGAGGTCTCTCGCGTCTCTTTATTCTAATGTGGGTAGAAATGCTGATGCGCTTGCTCTTTATTTCGGCGAGGATCCAGCACGTTGCCCTTTCGAGCAAGTTGTTAATACGCTGCTCAATTTCATGCGGATGTTTGTGCGAGCACATGAAGAAAACTGTAAGCAGCTTGATTACGAAAAGAAGAAAGCACAGAAGGAAGCAGCAGAAAAGGAGAAGTTGAAGATTGGTAACCCGAAAAACGAGTCAGGAATCTTGATGAAGACTCCAACCTAA 4242 43.8 MAFLQLFLLRGNLVIGASFYAYLDLEPNITMALFRKFFYRKPPDGLLEISERVYVFDCCFTTEVLEEDEYKVYIGGIVGQLRESLTDASFMVFNFREGESQSLITNILSMYDMTVMDYPRHYEGCPLLTMEMIHHFLRSCENWLSLMQQNVLLMHCERGGWPVLAFMLAALLIYRKQYAGEQKILDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVSRRNVGSEWPPLDRALTLDCIIIRLIPNMDGEGGCRPIFRIYGQDPFMAGDRTSKVLFSTPKRSKLVRQYKQSQVVCSSIQNYYSEFLELLVDCELVKIDIHCHIQGDVVFECISLDNDLEREEMVFRVMFNTAFIRSNILMLNRDDIDILWHAKDQFPKDFRAEVLFSEMDANASRISIELPNIEEKDGLPIEAFARVQEIFSNVEWLSPKAEAALTALQKMTASNFLQEKLISFNSLDRNQLLDLSLEKLISESETSEDNIRSPQLKIQKNQSEPSSELYRTERSVRSKIETPELQVALELPPQTKIVTQRIPQPSMSTPVSFPSSVQGSPSPKLRYPSAPSAPGNTALFHDHSKFSGKEVIHPATISSPSSYRLTPSALDSYKYIQPGKHPILPPPLALEPSSTLERPSTTTSTSTISDPFVLRQLSLKPIKPSISQPSQTTSLGRSQLLPSSLQPTPSSFLRKSTPSFNESLPSISSSSLLRSCPCSCAKQSFCLPTPPSPPISHLDSSSFLVTSPSFGRMNGSFSPSPPQPSSTTILLSSTMTSIPVVLQSSSSNDRLVSSQLPKKNLSIVPPPPLSPHPPPPCSSPNLGASVVLPTSVPPPPPPPLAPPLPPSLSSSTCGSSTMSLGPPSPPPPPSPAPQGSTTVVRNLKVVPGPPPPPSPPSPRSSPDPSNVSLAPPPPPPPLLPSRAPNVSATTHVSGPPPPPPPPSANSGSTSSPGVVTSAPPAPPPSGFSTTGPAPPAPPPSSQSHAGTNNGNIPSIPGPPSSALLAKGRGLGRLNSKNVSQPKRCNLKPYHWLKLTRAMQGSLWAESPKNDEASKAPEFDMSELESLFSAAAPNSESGGSGRNSNRRASGPKPEKVQLIELRRAYNCEIMLSKVKIPLPDMMCSVLALDDMALDVDQVENLIKFCPTKEEMELLKGYTGDKDNLGKCEQVPRVEAKLRVFSFKIQFGLQVSDLRYSLNTVNSIRNSIKLKRVMQTILSLGNALNHGTARGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVIAEKLPELIEFPKDLVHLEISTKIQLKYLAEEMQAISKGLEKVVQELSNSENDGSVSETFCRTLKDFLSHAEAEVRSLASLYSNVGRNADALALYFGEDPARCPFEQVVNTLLNFMRMFVRAHEENCKQLDYEKKKAQKEAAEKEKLKIGNPKNESGILMKTPT 1413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11366769 11376210 - CmaCh01G016620.1 Cma01g01662 287355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01662 1413 Gene3D - 226 390 - -
Cma01g01662 1413 MobiDBLite consensus disorder prediction 612 636 - -
Cma01g01662 1413 MobiDBLite consensus disorder prediction 1390 1413 - -
Cma01g01662 1413 MobiDBLite consensus disorder prediction 944 969 - -
Cma01g01662 1413 MobiDBLite consensus disorder prediction 475 497 - -
Cma01g01662 1413 ProSiteProfiles C2 tensin-type domain profile. 229 387 IPR014020 -
Cma01g01662 1413 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 231 387 IPR035892 -
Cma01g01662 1413 SMART PTEN_C2_2 227 386 IPR014020 -
Cma01g01662 1413 MobiDBLite consensus disorder prediction 531 553 - -
Cma01g01662 1413 PANTHER FORMIN-J 31 1404 - -
Cma01g01662 1413 MobiDBLite consensus disorder prediction 1058 1074 - -
Cma01g01662 1413 Gene3D Protein tyrosine phosphatase superfamily 38 221 IPR029021 -
Cma01g01662 1413 MobiDBLite consensus disorder prediction 622 636 - -
Cma01g01662 1413 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1004 1394 IPR015425 -
Cma01g01662 1413 MobiDBLite consensus disorder prediction 531 559 - -
Cma01g01662 1413 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1080 1395 - -
Cma01g01662 1413 MobiDBLite consensus disorder prediction 1058 1080 - -
Cma01g01662 1413 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 42 217 IPR029021 -
Cma01g01662 1413 MobiDBLite consensus disorder prediction 919 934 - -
Cma01g01662 1413 Pfam Formin Homology 2 Domain 1008 1368 IPR015425 -
Cma01g01662 1413 MobiDBLite consensus disorder prediction 790 994 - -
Cma01g01662 1413 MobiDBLite consensus disorder prediction 970 984 - -
Cma01g01662 1413 MobiDBLite consensus disorder prediction 848 862 - -
Cma01g01662 1413 MobiDBLite consensus disorder prediction 790 808 - -
Cma01g01662 1413 MobiDBLite consensus disorder prediction 873 910 - -
Cma01g01662 1413 MobiDBLite consensus disorder prediction 817 834 - -
Cma01g01662 1413 SMART it6_source 1003 1413 IPR015425 -
Cma01g01662 1413 Coils Coil 1369 1396 - -
Cma01g01662 1413 MobiDBLite consensus disorder prediction 472 503 - -
Cma01g01662 1413 MobiDBLite consensus disorder prediction 651 688 - -
Cma01g01662 1413 Pfam C2 domain of PTEN tumour-suppressor protein 230 386 IPR014020 -
Cma01g01662 1413 Gene3D Formin, FH2 domain 1023 1404 IPR042201 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01662 Cma09g00412 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01662 Cma-Chr1:11366769 Cma02g01653 Cma-Chr2:9362611 2.64E-152 dispersed
Cma01g01662 Cma-Chr1:11366769 Cma10g00473 Cma-Chr10:2140987 0 wgd
Cma01g01662 Cma-Chr1:11366769 Cma11g00467 Cma-Chr11:2260206 1.14E-180 wgd
Cma01g01662 Cma-Chr1:11366769 Cma09g00412 Cma-Chr9:1750408 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01662 - - csv:101214019 1779.22