Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01664 ATGTCGGACGAGGAGCACCACTTTGAATCCAAGGCCGACGCCGGAGCCTCCAAAACCTACCCTCAACAGGCCGGAACCATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCTAAGACTGGCAAGCACGGGCATGCTAAGTGTCACTTCGTCGGAATTGACATCTTCACTGCCAAGAAGCTTGAAGATATCGTTCCATCATCCCACAATTGTGATGTGCCTCATGTTAATCGTACTGATTATCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGTCTTTTGACTGACAATGGTAACACCAAGGATGATTTGAGGCTCCCAACTGATGATAACCTGCTCTCTCAGATTAAGGATGGATTTGCTGAAGGAAAGGACCTTGTCGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCTTGAAGGATATCGGCCCGAAGAACTAG 483 48.03 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDNLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11385332 11387384 + CmaCh01G016640.1 Cma01g01664 287357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01664 160 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Cma01g01664 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Cma01g01664 160 CDD S1_eIF5A 86 156 - -
Cma01g01664 160 Gene3D - 86 159 IPR012340 -
Cma01g01664 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cma01g01664 160 TIGRFAM eIF_5A: translation elongation factor IF5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cma01g01664 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cma01g01664 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cma01g01664 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cma01g01664 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cma01g01664 160 MobiDBLite consensus disorder prediction 1 21 - -
Cma01g01664 160 Gene3D - 1 85 IPR014722 -
Cma01g01664 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01664 Cma-Chr1:11385332 Cma09g00411 Cma-Chr9:1742982 1.22E-117 dispersed
Cma01g01664 Cma-Chr1:11385332 Cma10g00468 Cma-Chr10:2119507 2.56E-28 wgd
Cma01g01664 Cma-Chr1:11385332 Cma11g00460 Cma-Chr11:2241935 5.83E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01664 K03263 K02180 fve:101296375 323.939