Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01666 ATGCTGTTTCTTGGTCTGTTTGTTCTGATATTGGCTAAAGAAGCCATGGTGGATGTTAATTGTAACCCCGATTTGGCTTCGAATAAACTATCACTTGATGAAATTAGAGATTCTTTGATCAGACAAGAGGATACTATTGTTTTCTGTCTCATTGAGAGAGCCAAGTTTCCTCTTAATCCAAAGCTGTACCATCGTAATCATGGATTTACTGGTTCTTTGGTTGAGTTCATTGTGAGAGAAACCGAGGCCATTCAAGCTAAGGCCGGTAGATATGAGAATCCTGAAGAAAATGCATTCTTCCCAGAACATTTGCCTCGTCCTTTGGTGCACCCTCACAAGTATCCAAAGGTTTTGCATCCTTCAGGTGCTTCAATTAATATGAACAAACCCATATGGGATTTCTATTTCAATAAATTCTTACCATTGTTGGTTGCCGATGGCGACGATGGAAATTATGCAGCCACTGCTGCTAGTGATCTTGCCTGTTTGCAGGCACTTTCAAGGAGGATTCACTGTGGAAAATACGTAGCTGAGGTGAAGTTTAGGGACGCCCCCCATGAATACGAGCCTCCTATTCGCTCTCAGGAAAGAGATAGTTTGATGAAGTTATTAACATTTGAGGCCGTGGAAGAGATGGTGAGGAAGAGAGTAGAGAAGAAGGCTAGGGTGTTTGGGCAAGAAGTCACCCTCAACAACACAATTGATGGGGGAAAGTATAAGATCGATCCATTGCTCGCGGCTCGCCTTTACGACGAATGGGTAATGCCTCTCACGAAGGAAGTCGAAGTCGAATACCTTCTACGTCGTCTTGAATGA 816 43.26 MLFLGLFVLILAKEAMVDVNCNPDLASNKLSLDEIRDSLIRQEDTIVFCLIERAKFPLNPKLYHRNHGFTGSLVEFIVRETEAIQAKAGRYENPEENAFFPEHLPRPLVHPHKYPKVLHPSGASINMNKPIWDFYFNKFLPLLVADGDDGNYAATAASDLACLQALSRRIHCGKYVAEVKFRDAPHEYEPPIRSQERDSLMKLLTFEAVEEMVRKRVEKKARVFGQEVTLNNTIDGGKYKIDPLLAARLYDEWVMPLTKEVEVEYLLRRLE 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11388621 11391845 + CmaCh01G016660.1 Cma01g01666 287359

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01666 271 PIRSF Chor_mut_AroQ_eu 19 271 IPR008238 GO:0004106|GO:0009073
Cma01g01666 271 Gene3D Chorismate mutase, AroQ class superfamily, eukaryotic 24 271 IPR037039 GO:0004106|GO:0009073
Cma01g01666 271 PANTHER CHORISMATE MUTASE 25 271 IPR008238 GO:0004106|GO:0009073
Cma01g01666 271 SUPERFAMILY Chorismate mutase II 27 271 IPR036263 GO:0046417
Cma01g01666 271 ProSiteProfiles Chorismate mutase domain profile. 23 271 IPR008238 GO:0004106|GO:0009073
Cma01g01666 271 TIGRFAM CM_pl-yst: chorismate mutase 30 271 IPR008238 GO:0004106|GO:0009073
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01666 K01850 E5.4.99.5; chorismate mutase [EC:5.4.99.5] - csv:101213051 416.001
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01666 Cma09g00410 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01666 Cma-Chr1:11388621 Cma11g01158 Cma-Chr11:6701452 9.12E-93 dispersed
Cma01g01666 Cma-Chr1:11388621 Cma09g00410 Cma-Chr9:1738292 8.50E-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g575 Blo01g01418 . Bda01g00662 . . Bpe02g00535 . . . . Cma01g01666 . Car09g00360 . . . Cpe06g00295 . . . . . . . Cla05g01680 Cam05g1795 Cec05g1804 Cco05g1862 Clacu05g1782 Cmu05g1667 Cre05g1797 Cone4ag1747 Cone7ag1666 . . Lsi04g01337 . . . . . . . . . . . Sed05g1745 Cmo01g01715 Cmo09g00415 Cma09g00410 . Car01g01280 . . Cpe02g00324 Bhi09g03009 Tan01g3563 Cmetu07g2151 . . . . . . . . . . . . . . Cme07g00121
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008493 1 2 0 0 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 1 3 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01666 Cma_Chr01 FPKM 14.30122 12.60739 14.378148 18.225704 6.449911 4.708338 4.948011 0.249578 0.233204 0.0