Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01667 ATGGGGACATCAGGCGCAAAGGACGATATAGAGATGAATAGCGAGCCGGAAGACTTATCACCTGGAACTGATATGGATACAGACGATGATGATTATTCTGAGCCAGTCAACATTCATGATCTAGGTGAAGTATTTTTAAAGGATTTCTGTAAGAAGTCATCAATGGCATTTTTTGATGAGTACGGCCTTATCAGTCACCAACTTAACTCGTACAATGACTTCATAAAAAGTGGCATTCAGAAGTCCTTTGATTACTTTGGTGAGATCGTAGTTCAGCCAGGATATGACCCCTCAAAGAAAGGAGATGGAGAATGGAGATATGCTTCAGTGAAGTTTGGCAAGGTAACTCTTGATAAGCCAAAGTTCTGGGGTGGTGCAGCAAGTGGAAAAGAGTATAACTTGCTTCCTAGGCACGCTCGACTACAGAACATGACTTATTCCTCAAGGATGAAAATGAATATTAATGTAGAGGTGTATACTCAAAGGTTAGTCAGAAGTGATAAATTCAAAACTGGACAAGATCAATATGTCGACAAGGATCTCTTAAGTCAAGATAACAGGGATATATTTATAGGCAGGCTACCTGTGATGGTGAATTCTGACCTTTGCTGGATGAAGGATGATCAGAAACGTGACTGCGAATTTGATCATGGAGGTTATTTTTTAATCAAAGGTGCAGAAAAAATATTTATTGCTCAAGAGCAAATTTGTTTGAGAAGACTCTGGATTTCTAATAATCAAGGTTGGACTGTGGCATATAGATCAGAAGTTAAGAGAAATAGACTAATTATTAGACTAGTTGAAAATTCCAAGTCTGAAGAACTAAAAAGCAAGGAGAAAGTCCTCAATGTATATTTCTTGTCTACAGAAATTCCTGTGTGGATTTTATTCTTTGCACTTGGTGTTTCTTCGGACAGAGAAATAGTAGATTTAATCGACTTTGGCAGAGAGGATCCAACTGTTTTGAATATTCTCTTTGCCTCTGTTCGTGTAGTCGATAATGATGATAAGTGGAAAGACTTTCGAAGAGGTAAAAGAGCTCTGAATTTTTTGGAGAATGAGGTTAAAAAGACGAGCTTCCCACCTGCTGAAAAAATTGAAGATTGCTTGAACCTTTATCTTTTTGCCAGCTTGAAAGGCTTAAAGCAGAAGTGTCGTTTCCTTGGTTATATGGTTAAATGTCTCCTGCAAGCCTATACTGGCCGTAGGAAATGTGATAATAGGGATGATTTCCGCAATAAGAGGTTTGAGTTGGCTGGAGAATTGCTTGAAAGAGAGATTAAAGTACATATTGCACATGCACGTAGGCGTATGGAAAAGGCTCTGCAAAGGGACCTCTATGGAGATCGTGATGTGCGTCCAATTGAACACTATTTTGATGCTTCCATAATCACTAATGGTCTATCCCGAGCATTCTCTACTGGAGCATGGGCACATTCATTCAAGAGGATGGAAAGAATTTCAGGTGTGGTGGCAACGCTTGGTCGTGCTAATCCCCTGCAGACAATGGCTGAATTGAGGAGAACACGTCAACAGGTTGCATACACTGGGAAAGTTGGTGATGCTAGATACCCGCATCCTTCTCACTGGGGAAGGGTTTGCTTTCTCTCCACCCCGGATGGTGAAAATTGTGGGCTTATTAAAAATTTGTCCATCACAGGACTTGTAAGCTTAAACACATTGAAGCCCGTAGTTCCCACCTTGTTTCGTTGTGGGATGGAGAATGTGGTGGACGATACATCTACTTCTCTTAGTGGGAAGCACAAAATTTTTCTCAATGGGGAATGGGTTGGAGTTTGTGAAGATTCCCTTTCATTTGTAACGAAAGTGAGACTCAAGCGGCGAAGGAATCTGTTACTGCATCAGGTAGAAGTCAAAAGAGATGAACAACTGAAAGAAGTACGTATATTTTCCGATGCTGGAAGGATATTACGTCCTCTCTTAGTTGTAGAGAACTTAAACAGGATTGATAAATCTAAGGGGGAAAGCTACACTTTTCAATCCCTTTTGGACAAGGGAATAATTGAACTTATTGGAACTGAAGAAGAAGAAGACTGTCGTACAGCTTGGAGTATTAAGCATCTTACGGAAGATCAAGGGACTTCGAAATATACCCATTGTGAGCTGGATACGTCATTTTTATTAGGTTTAAGCTGTGGACTTGTCCCGTTTGCAAATCATGACCATGCTAGGAGGGCTCTATTTCAATCCCAGAAACACTCTAATCAAGCTATTGGATTTTCAACAACCAATTCTAATTTTCGTGTAGATACTTTATCTCACCAGTTACACTATCCACAAAGGCCGCTTTTTCGTACTATGACTGCTGATTGCCTTGGGACACCTGGATACCTGTCATCTCACACTGGTATACTACCAAAACCCGAGTTCTATAATGGTCAGAACGCTATTGTGGCAGTCAATGTTCACCTGGGTTACAACCAAGAAGATTCATTAGTAATGAACCGGGCCTCTCTGGAGCGTGGCATGTTTCGGTCTGAGCATACTCGGAGCTACAAGGCTGAAGTTGATAATAAAGAATCTTCCGAAAAGAGGAGGAAATCCGATGATGCAATAAATTTTGGTAAGACTCAAAGTAAAATTGGAAGAGTTGACAGCTTGGACGATGATGGCTTCCCTTACATCGGTGCAAACTTGCAAAGTGGAGACATTGTCATTGGTAGGTGTGCAGAATCTGGGGCCGATCACAGTATCAAACTGAAGCACACTGAGAAGGGTATGGTTCAGAAAGTTGTGCTCTCTTCTAATGACGATGGCAAGAATTTTGCTGTTGTAAGCCTGAGACAGGTTCGTTCACCATGTCTTGGAGACAAGTTTTCCAGTATGCATGGACAAAAGGGAGTTCTGGGCTTTTTGGAGTCTCAAGAGAATTTCCCCTTCACCATTCAGGGGATAGTTCCAGATATTGTTATAAACCCGCATGCTTTTCCTTCACGACAGACTCCTGGTCAACTCTTGGAAGCTGCTCTAGGGAAAGGGATTGCTTCTGGCGGTTCGCTTAAATATGCGACTCCTTTTTCCACTCCTTCTGTTGATGCCATTACAGACCAGCTTCACAGGGCAGGGTTTTCAAGATGGGGGAGTGAGAGGGTGTACAATGGCCGAACTGGTGAAATGATGCGCTCACTCATATTCATGGGTCCAACATTCTACCAGCGCTTAATTCACATGGCTGAAGACAAGGTTAAATTTCGAAACACTGGACCTGTCCACCCTCTCACACGACAACCGGTAGCGGACAGGAAGCGTTTTGGTGGAATCAAATTTGGGGAGATGGAGCGTGACTGTCTTATAGCTCATGGCGCCTCGGCCAACTTACACGAACGCTTGTTTACCCTCAGTGACTCCTCCCAGATGCACGTTTGCCAGAAATGTAAAAATGTTGCAAATGTGATCCAACGATCGGTGGCTGGTGGTCGTAAGATAAGGGGTCCATACTGTCGTGTTTGCGAGTCGGTGGATGACATTGTGAGAGTTAATGTACCGTATGGAGCCAAGTTGTTGTGCCAGGAGCTCTTCAGCATGGGCATCAATCTCAAGTTTGAAACCCAAATGTTTTTGAGGGTATTGTGTGATGAAATGGTGGTGATGACGACATGGAGGTTTCTTATTTGCTTTTGTTATATGTTATCTTTATATGCTAAAATGAAGCGGCGGTCTCCGAGGAACAACTGTTCAGTGGGGAAAATTGACTTGACCGAGGTAGCAAATATGTCGTAA 3741 42.31 MGTSGAKDDIEMNSEPEDLSPGTDMDTDDDDYSEPVNIHDLGEVFLKDFCKKSSMAFFDEYGLISHQLNSYNDFIKSGIQKSFDYFGEIVVQPGYDPSKKGDGEWRYASVKFGKVTLDKPKFWGGAASGKEYNLLPRHARLQNMTYSSRMKMNINVEVYTQRLVRSDKFKTGQDQYVDKDLLSQDNRDIFIGRLPVMVNSDLCWMKDDQKRDCEFDHGGYFLIKGAEKIFIAQEQICLRRLWISNNQGWTVAYRSEVKRNRLIIRLVENSKSEELKSKEKVLNVYFLSTEIPVWILFFALGVSSDREIVDLIDFGREDPTVLNILFASVRVVDNDDKWKDFRRGKRALNFLENEVKKTSFPPAEKIEDCLNLYLFASLKGLKQKCRFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELAGELLEREIKVHIAHARRRMEKALQRDLYGDRDVRPIEHYFDASIITNGLSRAFSTGAWAHSFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSITGLVSLNTLKPVVPTLFRCGMENVVDDTSTSLSGKHKIFLNGEWVGVCEDSLSFVTKVRLKRRRNLLLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRIDKSKGESYTFQSLLDKGIIELIGTEEEEDCRTAWSIKHLTEDQGTSKYTHCELDTSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHTRSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIASGGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVANVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQMFLRVLCDEMVVMTTWRFLICFCYMLSLYAKMKRRSPRNNCSVGKIDLTEVANMS 1246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11394617 11402698 + CmaCh01G016670.1 Cma01g01667 287360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01667 1246 CDD RNA_pol_B_RPB2 63 1189 IPR015712 GO:0003899|GO:0006351|GO:0032549
Cma01g01667 1246 Pfam RNA polymerase Rpb2, domain 4 590 651 IPR007646 GO:0003677|GO:0003899|GO:0006351
Cma01g01667 1246 Pfam RNA polymerase Rpb2, domain 2 276 415 IPR007642 GO:0003677|GO:0003899|GO:0006351
Cma01g01667 1246 Pfam RNA polymerase Rpb2, domain 6 720 1090 IPR007120 GO:0003677|GO:0003899|GO:0006351
Cma01g01667 1246 Gene3D RNA polymerase alpha subunit dimerisation domain 1077 1191 - -
Cma01g01667 1246 Pfam RNA polymerase Rpb2, domain 5 666 710 IPR007647 GO:0006351
Cma01g01667 1246 Gene3D - 720 1076 IPR037033 GO:0003677|GO:0003899|GO:0006351
Cma01g01667 1246 Gene3D RNA polymerase Rpb2, domain 2 243 405 IPR037034 GO:0003677|GO:0003899|GO:0006351
Cma01g01667 1246 MobiDBLite consensus disorder prediction 1 33 - -
Cma01g01667 1246 Pfam RNA polymerase Rpb2, domain 3 494 553 IPR007645 GO:0003677|GO:0003899|GO:0006351
Cma01g01667 1246 Pfam RNA polymerase beta subunit 62 454 IPR007644 GO:0003677|GO:0003899|GO:0006351
Cma01g01667 1246 Pfam RNA polymerase Rpb2, domain 7 1092 1190 IPR007641 GO:0003677|GO:0003899|GO:0006351
Cma01g01667 1246 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 47 1190 - -
Cma01g01667 1246 Gene3D - 750 939 IPR014724 GO:0003899
Cma01g01667 1246 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 32 1190 IPR015712 GO:0003899|GO:0006351|GO:0032549
Cma01g01667 1246 PANTHER DNA-DIRECTED RNA POLYMERASE D SUBUNIT 2B-RELATED 32 1190 - -
Cma01g01667 1246 Gene3D - 55 237 - -
Cma01g01667 1246 Gene3D - 406 589 - -
Cma01g01667 1246 MobiDBLite consensus disorder prediction 837 858 - -
Cma01g01667 1246 ProSitePatterns RNA polymerases beta chain signature. 943 955 IPR007121 GO:0003677|GO:0003899|GO:0006351
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01667 - - K16252 csv:101212812 2236.45
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01667 Cma09g00409 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01667 Cma-Chr1:11394617 Cma03g01262 Cma-Chr3:8283726 0 dispersed
Cma01g01667 Cma-Chr1:11394617 Cma09g00409 Cma-Chr9:1733920 4.18E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g576 Blo01g01419 . Bda01g00661 . . Bpe02g00534 . Bma01g02175 . . Cma01g01667 . Car09g00358 . . . . . . . . . . . Cla05g01679 Cam05g1794 Cec05g1802 Cco05g1858 Clacu05g1781 Cmu05g1666 Cre05g1796 . . Cone17ag0982 . Lsi04g01338 . . . . . . . . . . . Sed13g1963 Cmo01g01716 Cmo09g00414 Cma09g00409 . Car01g01281 . . Cpe02g00323 Bhi09g03010 Tan01g3560 Cmetu07g2167 . Hepe01g1964 Mch11g0501 . . . . . . . . . . . Cme07g00123
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010517 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01667 Cma_Chr01 FPKM 7.782906 9.280775 9.895797 10.090612 13.037449 13.423567 14.467762 11.906534 10.811814 12.306111