Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g01674 | ATGGGCATTTACCTCAGCAATCCAAAAACTGAGAAGAGCTCTGAAGATGGTGAAAATAGTCGTCTTAGATTTGGACTATCGTCCATGCAAGGATGGCGTGCCACAATGGAAGATGCTCATGCTGCAATTCCTGATCTGGATGCTTGCACTTCCTTCTTTGGCGTTTATGATGGCCATGGAGGTAAGGTGGTTGCGAAGTTCTGTGCTAAGTACCTACATCAGCAAGTGAAGAAAAATGAAGCTTATGCAGCTGGAGATATAGGAACTTCTGTGCAGAAAGCGTACTTGAGAATGGATGAAATGATGCGTGGACAAAGAGGATGGAGAGAATTAGCTATTTTGGGTGACAGATTGAACAAGTTCACTGGCATGATAGAGGGGTTAATCTGGTCACCAAAAAGCAGTGATGCAAATGACCAGGCTGATGATTGGGCTTTTGAGGAGGGTCCGCACTCTGATTTTTCTGGCCCCACTTCGGGGTGTACAGCTTGTGTTGCAATTATTAGAAATAACAAACTTATTGTTGCTAATGCTGGTGATTCACGTTGCGTGATATCAAGGAAGGGCCAGGCTCACAGCCTCTCTAGGGATCACAAGCCTGATCTTGAGATAGAGAGGGACAGAATTCTTAAAGCTGGTGGTTTTATACATGCTGGACGGGTCAATGGTAGCTTGAACCTTGCCAGAGCTATTGGTGATATGGAATTTAAGCAGAATAAATTTTTACCTGCTGAAAAGCAAATTATCACTGCAAATCCTGATGTAACCACTGTTGATCTTTGCGACGATGACGAGTTTATTGTGATAGCCTGTGATGGGATATGGGATTGCATGTCTAACCAGCAGCTAGTAGATTTTATACATGAACAGCTACAATCAGAAAATAAACTCTCTCTGGTTGTAGAGAGAGTACTCGATAATTGTTTGGCACCTTCCACATCTGGTGGCGAGGGATGTGATAACATGACCATGATTTTGGTGCAGCTTAAGAAAGATATCCAATCAAACTCCTCTGTCGAAGAGCAAACTTCACCCGCTACCGCTACCGTCACCACCAAACCAGACAGTACCAAATCGAAGGAGGGAGATGAATCGAACTAG | 1101 | 43.87 | MGIYLSNPKTEKSSEDGENSRLRFGLSSMQGWRATMEDAHAAIPDLDACTSFFGVYDGHGGKVVAKFCAKYLHQQVKKNEAYAAGDIGTSVQKAYLRMDEMMRGQRGWRELAILGDRLNKFTGMIEGLIWSPKSSDANDQADDWAFEEGPHSDFSGPTSGCTACVAIIRNNKLIVANAGDSRCVISRKGQAHSLSRDHKPDLEIERDRILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAEKQIITANPDVTTVDLCDDDEFIVIACDGIWDCMSNQQLVDFIHEQLQSENKLSLVVERVLDNCLAPSTSGGEGCDNMTMILVQLKKDIQSNSSVEEQTSPATATVTTKPDSTKSKEGDESN | 366 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11423158 | 11431584 | - | CmaCh01G016740.1 | Cma01g01674 | 287367 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g01674 | 366 | ProSitePatterns | PPM-type phosphatase domain signature. | 52 | 60 | IPR000222 | GO:0043169 | |
Cma01g01674 | 366 | MobiDBLite | consensus disorder prediction | 336 | 355 | - | - | |
Cma01g01674 | 366 | PANTHER | PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED | 1 | 342 | - | - | |
Cma01g01674 | 366 | MobiDBLite | consensus disorder prediction | 336 | 366 | - | - | |
Cma01g01674 | 366 | ProSiteProfiles | PPM-type phosphatase domain profile. | 23 | 329 | IPR001932 | - | |
Cma01g01674 | 366 | CDD | PP2Cc | 23 | 329 | IPR001932 | - | |
Cma01g01674 | 366 | Gene3D | - | 1 | 330 | IPR036457 | - | |
Cma01g01674 | 366 | SUPERFAMILY | PP2C-like | 3 | 330 | IPR036457 | - | |
Cma01g01674 | 366 | Pfam | Protein phosphatase 2C | 135 | 313 | IPR001932 | - | |
Cma01g01674 | 366 | Pfam | Protein phosphatase 2C | 23 | 103 | IPR001932 | - | |
Cma01g01674 | 366 | PANTHER | PROTEIN PHOSPHATASE 2C | 1 | 342 | IPR015655 | GO:0004722|GO:0006470 | |
Cma01g01674 | 366 | SMART | PP2C_4 | 13 | 327 | IPR001932 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01674 | Cma-Chr1:11423158 | Cma17g00902 | Cma-Chr17:6820003 | 0 | dispersed | |
Cma01g01674 | Cma-Chr1:11423158 | Cma08g00588 | Cma-Chr8:3350272 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g01674 | K17499 | - | csv:101211604 | 655.981 |