Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01674 ATGGGCATTTACCTCAGCAATCCAAAAACTGAGAAGAGCTCTGAAGATGGTGAAAATAGTCGTCTTAGATTTGGACTATCGTCCATGCAAGGATGGCGTGCCACAATGGAAGATGCTCATGCTGCAATTCCTGATCTGGATGCTTGCACTTCCTTCTTTGGCGTTTATGATGGCCATGGAGGTAAGGTGGTTGCGAAGTTCTGTGCTAAGTACCTACATCAGCAAGTGAAGAAAAATGAAGCTTATGCAGCTGGAGATATAGGAACTTCTGTGCAGAAAGCGTACTTGAGAATGGATGAAATGATGCGTGGACAAAGAGGATGGAGAGAATTAGCTATTTTGGGTGACAGATTGAACAAGTTCACTGGCATGATAGAGGGGTTAATCTGGTCACCAAAAAGCAGTGATGCAAATGACCAGGCTGATGATTGGGCTTTTGAGGAGGGTCCGCACTCTGATTTTTCTGGCCCCACTTCGGGGTGTACAGCTTGTGTTGCAATTATTAGAAATAACAAACTTATTGTTGCTAATGCTGGTGATTCACGTTGCGTGATATCAAGGAAGGGCCAGGCTCACAGCCTCTCTAGGGATCACAAGCCTGATCTTGAGATAGAGAGGGACAGAATTCTTAAAGCTGGTGGTTTTATACATGCTGGACGGGTCAATGGTAGCTTGAACCTTGCCAGAGCTATTGGTGATATGGAATTTAAGCAGAATAAATTTTTACCTGCTGAAAAGCAAATTATCACTGCAAATCCTGATGTAACCACTGTTGATCTTTGCGACGATGACGAGTTTATTGTGATAGCCTGTGATGGGATATGGGATTGCATGTCTAACCAGCAGCTAGTAGATTTTATACATGAACAGCTACAATCAGAAAATAAACTCTCTCTGGTTGTAGAGAGAGTACTCGATAATTGTTTGGCACCTTCCACATCTGGTGGCGAGGGATGTGATAACATGACCATGATTTTGGTGCAGCTTAAGAAAGATATCCAATCAAACTCCTCTGTCGAAGAGCAAACTTCACCCGCTACCGCTACCGTCACCACCAAACCAGACAGTACCAAATCGAAGGAGGGAGATGAATCGAACTAG 1101 43.87 MGIYLSNPKTEKSSEDGENSRLRFGLSSMQGWRATMEDAHAAIPDLDACTSFFGVYDGHGGKVVAKFCAKYLHQQVKKNEAYAAGDIGTSVQKAYLRMDEMMRGQRGWRELAILGDRLNKFTGMIEGLIWSPKSSDANDQADDWAFEEGPHSDFSGPTSGCTACVAIIRNNKLIVANAGDSRCVISRKGQAHSLSRDHKPDLEIERDRILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAEKQIITANPDVTTVDLCDDDEFIVIACDGIWDCMSNQQLVDFIHEQLQSENKLSLVVERVLDNCLAPSTSGGEGCDNMTMILVQLKKDIQSNSSVEEQTSPATATVTTKPDSTKSKEGDESN 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11423158 11431584 - CmaCh01G016740.1 Cma01g01674 287367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01674 366 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Cma01g01674 366 MobiDBLite consensus disorder prediction 336 355 - -
Cma01g01674 366 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 1 342 - -
Cma01g01674 366 MobiDBLite consensus disorder prediction 336 366 - -
Cma01g01674 366 ProSiteProfiles PPM-type phosphatase domain profile. 23 329 IPR001932 -
Cma01g01674 366 CDD PP2Cc 23 329 IPR001932 -
Cma01g01674 366 Gene3D - 1 330 IPR036457 -
Cma01g01674 366 SUPERFAMILY PP2C-like 3 330 IPR036457 -
Cma01g01674 366 Pfam Protein phosphatase 2C 135 313 IPR001932 -
Cma01g01674 366 Pfam Protein phosphatase 2C 23 103 IPR001932 -
Cma01g01674 366 PANTHER PROTEIN PHOSPHATASE 2C 1 342 IPR015655 GO:0004722|GO:0006470
Cma01g01674 366 SMART PP2C_4 13 327 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01674 Cma-Chr1:11423158 Cma17g00902 Cma-Chr17:6820003 0 dispersed
Cma01g01674 Cma-Chr1:11423158 Cma08g00588 Cma-Chr8:3350272 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01674 K17499 - csv:101211604 655.981