Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01675 ATGCAGGAAGATAAGTCGGTGATAAGTTTGAGACCAGGTGGTGGCGGTGGCGTTCGTGGAAGCAGATTTGCTACTACTCGCTTCGATTCATCCTCTGCCGATTCTTCGTCGCTTCGTCCTCATGGCGGCGTTACGTTAACCCTTAAGACTGGAGATCTACGGTTTGAAGGTCGTGAGCGAATCCAGTACACTCGAGACCAGATTCTGCAGCTTAGAGAGGTTGCAACAGTCCCTGAGGATATCTTGAAGGTCAAATTAGAAGTCGAGACAGAGATTTTTGGGGAGGATCAAACATGGGCTCGTGCTGAAAACATTCAGCAATCACAATCTCAAGGTCGTTACTTTGAGCCAGACAATCGAGATTGGCGTGGTCGATCTGGGCAGTTACCTGCCTCTGCAGAGGAAGGATCTTGGGATGCAATTCGTGAGGATAAGGATTTATCAGGTCAATCTCAGTCGAGGTTGCATGACTCTAATAATAGGAGTCAAGCTTCTGGTAACCAAGGGGTTGGTACTTCACCTGCCCTCATCAAGGCCGACGTTCCTTGGTCAGTTAGAAGAGGTAATATCTCAGAAAAGGAACGTGTTTTGAAGACAGTGAAAGGTATACTTAATAAGTTGACTCCAGAAAAGTTCGACATACTGAAGGGTCAACTGATTGACTCTGGAATTGTGTCCGCTGATATTTTGAAGGAGGTTATATCACTTTTATTTGAGAAGGCCGTGTTTGAGCCCACATTTTGCCCTATGTATGCACTTTTGTGCTCTGACCTTAATGACAAGCTTCCTCCATTCCCATCTGATGTTCCTGGAGAGAAAGATATCACTTTTAAACGTGTTCTTTTAAACATTTGCCAAGAGGCATTTGAAGGTGCTGAGCACATAAGGGCAGAAACCGGGCGGCTGACTGATCCTGAGCATGAAACGGAAAGAAGAGATAAGGAAAGAATGGTTAAGCTTCGAACTCTTGGAAACATTCGCCTGATAGGTGAGCTTCTTAAACAGAAGATGGTGACTGAAAGGATTGTTCACCATATTGTTCTGGAGCTGTTGGGGTCCGACAATAACACATGCCCTGCTGAGGAGAATGTTGAGGCTATTTGTCAGTTTTTTAACACAATTGGCAAGCAGATGGATGAAAGCCCAAAATCTCGGCGGGTCAATGATGTATATTTCAGCCGGTTGAAGGAGCTCGCTGCAAACACTCAACTAGCACCTAGGTTGAGATTTATGGTCCGTGATGTTCTTGATTTACGGGCCAATAATTGGGTTCCTAGGCGTGAAGAGGTGAAAGCAAAAACCATCACTGAAATTCATTCAGAGGCTGAGAAGAATCTAGGGCTTCGTCCCGGTTCAATGGCAATGATGAGAAATGGCCGTAATGCTGAGGCACTTGGGGGACTAAGTCCTGCTGGATTTCCTGTTGCTCGTCCTGGCTTTGGAGGTATGATGCCTGGAATGCCTCCTGGAACGAGGAAAATGCCTGGTATGCCTGGACTTGATTTGGACGATTGGGAGGTGGTTCCTAGATCCCGATCAATGCCAAGGGGTGAGCGTGCCCAGACGCCATTAATTGGCAAAACACCTTCCATTAATTCAAAATATCTACCTCAGGGAAGTGGTGGTGTAATAACTGGGAAAACAAGCGCCTTGCTACAGGGCAGTGGTGCATCTCCTGCACGAACAAGTCCCACGCCTGGAATCCAGCCCATCGCTCACAATGCTAGACCAGTTCCTCCAGTTGCATCCACCATATCCTCTCCTCAGAAGCCAACAGCTCCTGCTGTTGTATCCAATTCTGCTGATCTTCACAAAAAAACCGTTTCACTGCTCGAGGAATACTTCAGTGTACGGATTCTCGATGAAGCGCTACTGTGTGTAGAGGAGCTAAAATCTCCAGCATATCACCCCGAGGTTGTTAAAGAATCTCTTACCATAGCACTTGAAAAGATTCCACCATGTGTAGACCCAGTTGTTAAGCTTCTTGACCACCTGCTTCACAAGAATGTCTTCACTGCAAAGGATATCGGTACCGGGTGCCTTCTTTACGGGTCCATGATGGATGATATAGGCATCGATTATCCGAACGTGCCAAACTTTTTTGGTGATACCCTCGGGAAGTTAATATTGATCGGGGGTTTGGATTTTTCTGTCGTGAAGGAGATCCTGGAGAAGCTTGAAGATAACTATTTCCAGAAGTCCATTTTTGGTAGTGTTATGAAGATCCTCAACTCGAGCCCTTCTGGAGAAGGAATTCTGGCAACTCAAAGTGTTGAAATCCAAGCATGTGAGAATTTACTTGCGTGA 2307 46.12 MQEDKSVISLRPGGGGGVRGSRFATTRFDSSSADSSSLRPHGGVTLTLKTGDLRFEGRERIQYTRDQILQLREVATVPEDILKVKLEVETEIFGEDQTWARAENIQQSQSQGRYFEPDNRDWRGRSGQLPASAEEGSWDAIREDKDLSGQSQSRLHDSNNRSQASGNQGVGTSPALIKADVPWSVRRGNISEKERVLKTVKGILNKLTPEKFDILKGQLIDSGIVSADILKEVISLLFEKAVFEPTFCPMYALLCSDLNDKLPPFPSDVPGEKDITFKRVLLNICQEAFEGAEHIRAETGRLTDPEHETERRDKERMVKLRTLGNIRLIGELLKQKMVTERIVHHIVLELLGSDNNTCPAEENVEAICQFFNTIGKQMDESPKSRRVNDVYFSRLKELAANTQLAPRLRFMVRDVLDLRANNWVPRREEVKAKTITEIHSEAEKNLGLRPGSMAMMRNGRNAEALGGLSPAGFPVARPGFGGMMPGMPPGTRKMPGMPGLDLDDWEVVPRSRSMPRGERAQTPLIGKTPSINSKYLPQGSGGVITGKTSALLQGSGASPARTSPTPGIQPIAHNARPVPPVASTISSPQKPTAPAVVSNSADLHKKTVSLLEEYFSVRILDEALLCVEELKSPAYHPEVVKESLTIALEKIPPCVDPVVKLLDHLLHKNVFTAKDIGTGCLLYGSMMDDIGIDYPNVPNFFGDTLGKLILIGGLDFSVVKEILEKLEDNYFQKSIFGSVMKILNSSPSGEGILATQSVEIQACENLLA 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11433259 11439254 - CmaCh01G016750.1 Cma01g01675 287368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01675 768 MobiDBLite consensus disorder prediction 1 40 - -
Cma01g01675 768 SMART if4_15 197 422 IPR003890 GO:0003723|GO:0005515
Cma01g01675 768 ProSiteProfiles MI domain profile. 602 724 IPR003891 -
Cma01g01675 768 SUPERFAMILY ARM repeat 190 425 IPR016024 -
Cma01g01675 768 MobiDBLite consensus disorder prediction 24 40 - -
Cma01g01675 768 MobiDBLite consensus disorder prediction 137 151 - -
Cma01g01675 768 Pfam MA3 domain 604 714 IPR003891 -
Cma01g01675 768 MobiDBLite consensus disorder prediction 512 532 - -
Cma01g01675 768 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 1 767 - -
Cma01g01675 768 Gene3D - 598 757 - -
Cma01g01675 768 Gene3D - 188 423 - -
Cma01g01675 768 MobiDBLite consensus disorder prediction 103 174 - -
Cma01g01675 768 MobiDBLite consensus disorder prediction 152 172 - -
Cma01g01675 768 SUPERFAMILY ARM repeat 600 754 IPR016024 -
Cma01g01675 768 Pfam MIF4G domain 197 422 IPR003890 GO:0003723|GO:0005515
Cma01g01675 768 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 1 767 IPR045208 GO:0003743
Cma01g01675 768 SMART ma3_7 603 715 IPR003891 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01675 Cma09g00401 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01675 Cma-Chr1:11433259 Cma06g01184 Cma-Chr6:7952970 3.48E-64 dispersed
Cma01g01675 Cma-Chr1:11433259 Cma10g00459 Cma-Chr10:2086085 0 wgd
Cma01g01675 Cma-Chr1:11433259 Cma11g00450 Cma-Chr11:2201267 0 wgd
Cma01g01675 Cma-Chr1:11433259 Cma09g00401 Cma-Chr9:1700705 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01675 K03260 - csv:101211356 1190.25