Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01676 ATGTCTTTCTCCGCCACTTTCTCGTCTCCTTGCAATGTCTATTCACAAACCAGAACAGGTTTCTGCTATTTCCTTGCTTCGAGGCCTTCCATGGCGGCTACTTCAATTCCCTCCGTCAAAACCTCGCTCGCCGCTTCAAAGTCAGCTTTTATGCGCAATGATTTGACTCTCCAGTCGTCATCTTCTCGCGGTGTTTTCTCGAAATCTCAAATTTCTGGTGTAACTGCCAGAGCGGCGTCGGAGAAAAGTATTTATGATTTCACTGTTAAGGATATTGATGGCAAAGATGTTTCTCTGAACAATTTCAAAGGGAAGGTTCTTCTGATAGTAAACGTTGCATCTAGATGTGGTTTCGCGACTGGAAATTACACAGAACTGTCACACTTGTATGAGAAGTACAAAACTCAAGGATTTGAGATTTTGGCTTTTCCTTGCAACCAATTTGGAGGCCAAGAACCTGGGTCCAACCCAGAGATCAAGCAGTTCGCCTGCTCAAGATTCAAAGCAGAGTTCCCAATATTTGACAAGGTTGATGTCAATGGTCCAAACACTGCCCCATTTTATCAGTTTCTCAAATCAAGTGCTGGAGGATTCTTAGGCGGTTTTATCAAGTGGAACTTCGAGAAATTTTTGTTGGACAAAAATGGTAATGTCATTGAGAGATACCCACCAACGACATCCCCTCTTCAAATTGAGAAAGATATTCAAAGGCTTGTAGCCGCCTAA 726 42.98 MSFSATFSSPCNVYSQTRTGFCYFLASRPSMAATSIPSVKTSLAASKSAFMRNDLTLQSSSSRGVFSKSQISGVTARAASEKSIYDFTVKDIDGKDVSLNNFKGKVLLIVNVASRCGFATGNYTELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACSRFKAEFPIFDKVDVNGPNTAPFYQFLKSSAGGFLGGFIKWNFEKFLLDKNGNVIERYPPTTSPLQIEKDIQRLVAA 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11441095 11443850 + CmaCh01G016760.1 Cma01g01676 287369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01676 241 CDD GSH_Peroxidase 83 235 IPR000889 GO:0004602|GO:0006979
Cma01g01676 241 PANTHER GLUTATHIONE PEROXIDASE 28 241 IPR000889 GO:0004602|GO:0006979
Cma01g01676 241 Gene3D Glutaredoxin 69 241 - -
Cma01g01676 241 Pfam Glutathione peroxidase 84 192 IPR000889 GO:0004602|GO:0006979
Cma01g01676 241 ProSitePatterns Glutathione peroxidases active site. 104 119 IPR029759 -
Cma01g01676 241 SUPERFAMILY Thioredoxin-like 83 239 IPR036249 -
Cma01g01676 241 PRINTS Glutathione peroxidase family signature 102 119 IPR000889 GO:0004602|GO:0006979
Cma01g01676 241 PRINTS Glutathione peroxidase family signature 138 154 IPR000889 GO:0004602|GO:0006979
Cma01g01676 241 PRINTS Glutathione peroxidase family signature 203 212 IPR000889 GO:0004602|GO:0006979
Cma01g01676 241 ProSiteProfiles Thioredoxin domain profile. 78 240 IPR013766 -
Cma01g01676 241 PANTHER PHOSPHOLIPID HYDROPEROXIDE GLUTATHIONE PEROXIDASE 1, CHLOROPLASTIC 28 241 - -
Cma01g01676 241 ProSiteProfiles Glutathione peroxidase profile. 74 241 IPR000889 GO:0004602|GO:0006979
Cma01g01676 241 ProSitePatterns Glutathione peroxidases signature 2. 141 148 IPR029760 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01676 K00432 gpx, btuE, bsaA; glutathione peroxidase [EC:1.11.1.9] - csv:101211107 398.667
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01676 Cma09g00400 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01676 Cma-Chr1:11441095 Cma15g01220 Cma-Chr15:7722285 1.04E-83 dispersed
Cma01g01676 Cma-Chr1:11441095 Cma09g00400 Cma-Chr9:1696017 4.10E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g591 . Blo12g01044 . Bda03g00107 . . Bma04g00099 . . . Cma01g01676 . Car09g00351 . . . Cpe06g00287 . . . . . . . Cla05g01668 Cam05g1783 Cec05g1789 Cco05g1848 Clacu05g1771 Cmu05g1656 Cre05g1785 Cone4ag1740 Cone7ag1660 . . Lsi04g01348 . . . . . . . . Bpe04g00091 . . Sed05g1755 Cmo01g01726 Cmo09g00403 Cma09g00400 . Car01g01291 . . Cpe02g00315 Bhi09g03027 Tan01g3538 Cmetu07g1848 . Hepe01g1953 Mch11g0490 . . . . . . . . . . . Cme07g00134
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000163 11 8 6 9 6 6 7 6 6 5 4 6 8 5 6 8 6 11 3 6 6 7 6 5 5 6 5 14 6 5 198
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01676 Cma_Chr01 FPKM 0.861979 0.0 3.612622 3.792192 1.290491 0.0 0.672013 5.592462 4.136257 5.234088