Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma01g01679 | ATGGCTAAAGCGGCGTCGTGTTGGAAGATATGCTGCAACTATTTTGTTCTTCTGGGTTTGTTTGTTCCGGCCACGGCGGCCTTATCCTTCGGTTTCTATTCTGCCACGTGTCCTGCGGCGGAGTTGATTGTAAAGAATGCCGTCAGATCGGCTTCCTCCGAGGACCCCACCGTCCCCGGCAAGCTCCTCCGATTGATGTTCCATGACTGTTTCGTAGAGGGCTGTGATGCTTCTATTTTACTTCAAGGAAACGAAACAGAACGAACCGATCCAGCAAATAAGTCTGTTGGAGGATTTGAAGCGATCGATTCAGCTAAAAGAACTCTAGAATTTTTTTGTCCTGGAATTGTTTCTTGTGCAGACGTCGTTGTTTTGGCCGCTAGAGATGCCGTTGAATTCGCCGGCGGGCCCTCCGTCGAAGTCCCAACAGGCCGACGAGACGGAAGGATATCCGCGGCCACAAACGTCCGACCAAACATCGTCGACACAAGCTTTTCAGTCGACCAAATGATGAGTCTCTTCTCATCAAAAGGGCTGTCGGCAGACGATCTCGTCATACTCTCGGGAGCCCACACAATGGGAACCGCCCACTGTAGCGCCTTCAGCGACCGCTTCAGAAAGGGTCCAAACGGGCAGATGACCCTCATCGACGCCTCTCTCGACGTCACTTACGCCAACGAGCTTATGCAGCGGTGCTTCGCCGGAGCCGCCTCCACCGTCGTCGTTGATAACGATCCGGCGACGGCGAATGTCTTCGACAATCAGTACTACAAAAACATTCTGTCGCACAAGGGGCTGTTTCAGTCGGATTCCGTTCTGATTAGCGACGGCCGGACCAGGGCCCACGTGGAGAGATTTGCGAAGGATCAGATTGGGTTTTTTGAGAACTGGGGTCAGTCGTTCTTGAAACTTAGTAGTGTTGGAGTTAAAAGTGGGGACGAAGGGGAAATTAGACTGTCTTGTTCTACTAATAATGTCTGA | 981 | 51.78 | MAKAASCWKICCNYFVLLGLFVPATAALSFGFYSATCPAAELIVKNAVRSASSEDPTVPGKLLRLMFHDCFVEGCDASILLQGNETERTDPANKSVGGFEAIDSAKRTLEFFCPGIVSCADVVVLAARDAVEFAGGPSVEVPTGRRDGRISAATNVRPNIVDTSFSVDQMMSLFSSKGLSADDLVILSGAHTMGTAHCSAFSDRFRKGPNGQMTLIDASLDVTYANELMQRCFAGAASTVVVDNDPATANVFDNQYYKNILSHKGLFQSDSVLISDGRTRAHVERFAKDQIGFFENWGQSFLKLSSVGVKSGDEGEIRLSCSTNNV | 326 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 11455528 | 11457370 | + | CmaCh01G016790.1 | Cma01g01679 | 287372 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma01g01679 | 326 | CDD | secretory_peroxidase | 28 | 322 | IPR033905 | GO:0004601|GO:0042744 | |
| Cma01g01679 | 326 | PANTHER | PEROXIDASE 18-RELATED | 17 | 323 | - | - | |
| Cma01g01679 | 326 | ProSiteProfiles | Plant heme peroxidase family profile. | 27 | 325 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Cma01g01679 | 326 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 183 | 193 | IPR019793 | - | |
| Cma01g01679 | 326 | PRINTS | Plant peroxidase signature | 37 | 56 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Cma01g01679 | 326 | PRINTS | Plant peroxidase signature | 61 | 81 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Cma01g01679 | 326 | PRINTS | Plant peroxidase signature | 97 | 110 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Cma01g01679 | 326 | PRINTS | Plant peroxidase signature | 116 | 126 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Cma01g01679 | 326 | PRINTS | Plant peroxidase signature | 135 | 150 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Cma01g01679 | 326 | PRINTS | Plant peroxidase signature | 182 | 194 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Cma01g01679 | 326 | PRINTS | Plant peroxidase signature | 243 | 258 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Cma01g01679 | 326 | PRINTS | Plant peroxidase signature | 259 | 276 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Cma01g01679 | 326 | PRINTS | Plant peroxidase signature | 299 | 312 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Cma01g01679 | 326 | Gene3D | - | 31 | 325 | - | - | |
| Cma01g01679 | 326 | SUPERFAMILY | Heme-dependent peroxidases | 28 | 325 | IPR010255 | GO:0004601|GO:0006979|GO:0020037 | |
| Cma01g01679 | 326 | Pfam | Peroxidase | 44 | 289 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Cma01g01679 | 326 | PANTHER | PEROXIDASE 25-RELATED | 17 | 323 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Cma01g01679 | 326 | Gene3D | Peroxidase, domain 2 | 161 | 304 | - | - | |
| Cma01g01679 | 326 | PRINTS | Haem peroxidase superfamily signature | 59 | 73 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Cma01g01679 | 326 | PRINTS | Haem peroxidase superfamily signature | 117 | 134 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Cma01g01679 | 326 | PRINTS | Haem peroxidase superfamily signature | 135 | 147 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Cma01g01679 | 326 | PRINTS | Haem peroxidase superfamily signature | 183 | 198 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Cma01g01679 | 326 | PRINTS | Haem peroxidase superfamily signature | 245 | 260 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma01g01679 | Cma09g00392 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma01g01679 | Cma-Chr1:11455528 | Cma07g00408 | Cma-Chr7:1767659 | 1.11E-78 | dispersed | |
| Cma01g01679 | Cma-Chr1:11455528 | Cma09g00392 | Cma-Chr9:1659169 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma01g01679 | K00430 | K18328 | csv:101211842 | 517.694 |