Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01681 CCCTGTTTTCCCCATTCTCCGTCGACTCGTCGTTTCTCCTTTAAACGCTCCTTGAGCTCTCTCTTCTTTTCCTTTTTCTTTTTGCTTCCATTTCTCTTTCCCCTTCTATTCTTCTACCTCCTTCCTTTACCAGATTTGAGTTCATGTTCGGTGGCTCCACTGTCATGTGAGGAGCGGCTTATTCCTTTCGCATCTGTGACCATAGCTTCAAGATATTTCTTGTTCTTTTCCATTTTGATCGAAGAGATTGGAGCTGGGCATCTTGAGAGCCTACACAATATGGGCTATCTGAATCCAGTCTTGTCTTGTTCGAGCCAGATTCATGCTGCTGAGGAGGCTCCTGTAAGCGGCGGGGGACTAAGTCAGAATGGAAAATTCAGCTACGGATATGCTAGCTCTCCGGGGAAGAGATCTTCGATGGAAGATTTTTATGAGACACGTATAGATGGCGTGGATGGAGAGATAGTTGGTCTATTTGGTGTTTTTGACGGTCATGGGGGAGCACGAGCTGCAGAGTATGTGAAGCACAATCTTTTTAGTAATTTAATCAGCCATCCAAAGTTCATATCGGATACCAAATCTGCCATAGCTGATGCCTACAACCACACAGACACAGAATTTCTGAAGTCTGAAAATAATCAAAACAGAGATGCTGGATCAACCGCTTCCACTGCCATTCTAGTTGGTGATCGCTTACTTGTTGCAAATGTGGGTGATTCTAGAGCTGTTATTTGCCGGGGTGGAACTGCCATTGCTGTCTCTCGAGATCATAAGCCTGACCAAACTGATGAGCGACGACGAATTGAGGATGCAGGAGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCACGTGCATTTGGTGATAGGTTGTTGAAGCAATATGTTGTTGCTGACCCTGAAATTCAGGAGGAAAAGATCGATAGCTCGCTCGAGTTTCTTATACTTGCCAGTGATGGACTATGGGATGTCGTCACTAACGAGGAAGCTGTTGCTATGACCAAACTAATTCCGGACCCAGAGGAGTCAGCTAAGAGGTTGATGCAAGAAGCATATCAAAGAGGTAGTGCTGATAACATTACGTGCGTCGTAGTCCGTTTCTTGGCAAATCAGGGAAGCCCCTCTCTTGCAACTTCTGGGTAA 1161 45.65 PCFPHSPSTRRFSFKRSLSSLFFSFFFLLPFLFPLLFFYLLPLPDLSSCSVAPLSCEERLIPFASVTIASRYFLFFSILIEEIGAGHLESLHNMGYLNPVLSCSSQIHAAEEAPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVDGEIVGLFGVFDGHGGARAAEYVKHNLFSNLISHPKFISDTKSAIADAYNHTDTEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGTAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEFLILASDGLWDVVTNEEAVAMTKLIPDPEESAKRLMQEAYQRGSADNITCVVVRFLANQGSPSLATSG 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11465044 11469206 + CmaCh01G016810.1 Cma01g01681 287374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01681 386 SMART PP2C_SIG_2 138 373 IPR001932 -
Cma01g01681 386 ProSitePatterns PPM-type phosphatase domain signature. 158 166 IPR000222 GO:0043169
Cma01g01681 386 Gene3D - 119 377 IPR036457 -
Cma01g01681 386 SUPERFAMILY PP2C-like 121 373 IPR036457 -
Cma01g01681 386 SMART PP2C_4 117 371 IPR001932 -
Cma01g01681 386 Pfam Protein phosphatase 2C 156 366 IPR001932 -
Cma01g01681 386 PANTHER ALPHABET, ISOFORM E-RELATED 96 379 - -
Cma01g01681 386 PANTHER PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C 96 379 - -
Cma01g01681 386 CDD PP2Cc 126 373 IPR001932 -
Cma01g01681 386 ProSiteProfiles PPM-type phosphatase domain profile. 127 373 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01681 Cma-Chr1:11465044 Cma04g02414 Cma-Chr4:16659574 7.38E-123 dispersed
Cma08g01161 Cma-Chr8:7148868 Cma01g01681 Cma-Chr1:11465044 3.81E-19 dispersed
Cma15g00017 Cma-Chr15:115908 Cma01g01681 Cma-Chr1:11465044 1.51E-51 dispersed
Cma18g01003 Cma-Chr18:8424972 Cma01g01681 Cma-Chr1:11465044 4.44E-26 dispersed
Cma06g00020 Cma-Chr6:128639 Cma01g01681 Cma-Chr1:11465044 1.80E-45 transposed
Cma01g01681 Cma-Chr1:11465044 Cma09g00389 Cma-Chr9:1640856 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01681 K17506 - csv:101216117 563.148