Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01683 ATGGTCTGCGAGATGGAGACTGATGTTATTGAAGATATGGACATGGAAGCCCTTACTTCTATGTGGCCTGAGGATGTTGGACCAGATGTTAGAAAGCAGTTCAACGTAGAAAGGCCAGGAGCAGATCAAGATATGTTGGAAGAAGTTAACATAATAGAGGAACCTACAATAGTCGATTTCAAGAGACTTATAGAGTTAACTAACTATACTGAGAAAGGATCATCACAATTACAATACCTTGCAAAACAGTGGGAGTATAAACAAGCAAATGCTGTACGTCTCCTTAGAGAGGAACTTGACATCCTAAGCAAGCAGAGAAAAGAAGTCGAGCTCAAGAAATTGAAGATATTAGAGGAACATCTTTTTGAGGAAGAAAGATATGCTGGTGATAAACGTCCAATTTCTATTTTGGAAGAATCTTGTGATATATGGCAAGATATTCCAAGGAGGAAAACTGATTTCGTTGTTCAAAGTAAGAGAGTTGAAATTGACGCAGAGTATGGTACAGTGACATACTGGAAGCAGCGAGCCATAGATCTGGAAAAATTATTGGAAGCAAGTCTACAGCGAGAGCAAATACTTGCAGAGAAACTCCAGGAAAACGTAAAAAATATTGAAAAGCAGTCCTCGCCAGTTGAGGAGTTGTCACAGATTCTGAAAAGAGCCGACAATTTTTTGCATTTTGTTCTGCAGAATGCACCAATTGTTTTTGGCCATCAGGACAAAGAGTTGCGCTACCGATTTATCTACAATCATTTTCCTAGTTTGGAAGAAGAGGATATTATAGGAAGAACTGACGTTGAAATTTTTAGTGGTGCTGGTGTTAAAGAATCACAAGATTTCAAGAAAGAAGTTCTGGAGAAAGGGTTGCCTGCAAAGAGGGAAATACAGTTTGATACAGAATTATTTGGGCTGAAGACCTTTTTGATATATGTTGAACCTGTCTTTAGCAAGGCTGGGGAGACGATTGGAATAAATTATATGGGAATGGACATAACTGATCAGGTTAAAAAACGAGAAAAGATGGCAAAACTTCGTGAGGAGATAGCAGTACAAAAGGCCAAGGAATCAGAACTGAACAAAACAATTCATATTACGGAGGAGACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCCCACGAAATTAGATCCCCACTGTCTGGAGTGGTTAGTATGGCTGAGATCTTGTCCACCACAAAACTTGACCGAGAACAACGTCATCTATTGGAAGTTATGCTGTCTTCGGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGACCTGTCTAAAGTTGAATCAGGAGTAATGAAGTTGGAAACTACCAAATTCCGTCCAAGGGAGGTTGTAAAACATGTTCTGCAGACTGCTGCTGCATCATTGCGAAAATTCTTAGTTCTGGAGGGACGTATAGCAGATGATGTTCCTATAGAGGTTATTGGAGATGTTCTTAGGATTCGGCAAATTCTCACCAACTTGATCAGCAACGCAATCAAGTTCACTCATCAAGGGAAGGTTGGAATTAACCTCTATGTGTTACCCTATCCACCCATGGGGAAAGGAGAAGAGTGCCATAAGAAATCAATGGCTGATAACTCAACAGTTTCGGTACATGGTTTGCAAGGAGGAACATGTCTTCCAGCCCCTCAGAATGGCTTGCGTGGCCAAAAACACGGTGACAGAAATCATTTGCATTGTGATGCACCAGGAACCCCAAACAAGAGTGAAACCATAATGAATGGAAATAGAGAAAGCAAATCTTGTTCTCCAGAAACGACGGTATGGATACGTTGTGATGTATATGACACGGGAATTGGAATACCAGAAAATGCATTACCAAGCCTTTTTAAGAGGTACATGCAAGCTAGTGCCGATCATGCTCGGAAGTATGGAGGGACTGGACTTGGACTAGCAATATGCAAACAACTGGTTGAATTGATGGGTGGTCATCTCACCGTTTCCAGCCGAGAGAACCATGGATCAACATTTACATTTGTATTGCCATACAAGGTTTCAACCAGCAGCAGCAACAGCAGCACTTCCGACGATTCCGATGAGCTCTCAGATGAAGAGTCCACAGATGAAGAAATGACTGAGGGTTTTTTCCAATTCCAACCCCACAGTTTCAGTTCGCTATCATCTTCTAATGGATCCACAAGGATGATCCCAAACTCAGTTCGATATCCCAGCTCGACCGATGGTGGTTCTTATCATATACCTTCAAACAACATCACTCCACAACCACAAGAGACTGCTCTTAGAGATGCCCGTTCTGGCAATGCCACATTAACCTCAAACGAATCACAGTATTCATTAAGTCAGATCAATTCAAATCTTGGTAAGGAGAGATCAACAAACCAACCTGACGCAAATGCTCGGTTCCAAAATGCGAACGTGAATTCCATTCAACGGTTGGAAACAAAGCAAGAAGATACATTGGAAAAGCCAAGTAGTAAACTCCAAAAAACAGATCAGGGTAAAGAGAGGTCCAATGCAAGTTCCCACTGTAGAACTACCAGTAGTGGTTCTGAAGTAACAATGGCATTGGAAGCCAAAATTCTTCTTGTTGAGGATAATAAGACCAATATTATGGTGGCTCAATCCATGATGAAGAAGTTTGGCCAAAAAATCGACGTTGTAACCAATGGAATTGAAGGTGTTCGTGCAGTTCAACGACGTTCTTACGATCTCATTCTCATGGATGTGTTCATGCCAGTTATGGATGGCCTTCAAGCTACAAGGTTAATTCGTTCTTTTGAGGAAACAGGCAGCTGGGAGGCGGCTGTAAATGCTGGAATCGAGCCAACTACTCCTTCTTGGACTCCCTCATCCCGTAAAAGAATGCCCATCATTGCTATGACGGCGAATACATTGTCAGAAAGCGCGGATGAGTGTTATGAAAACGGTATGGACTCGTTCGTATCAAAGCCAATCACATTCCAAAAGTTGAAAGAATGTCTTGAGCAATATTTACCACAACGCCCCTTGTAA 2994 41.65 MVCEMETDVIEDMDMEALTSMWPEDVGPDVRKQFNVERPGADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLLREELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEESCDIWQDIPRRKTDFVVQSKRVEIDAEYGTVTYWKQRAIDLEKLLEASLQREQILAEKLQENVKNIEKQSSPVEELSQILKRADNFLHFVLQNAPIVFGHQDKELRYRFIYNHFPSLEEEDIIGRTDVEIFSGAGVKESQDFKKEVLEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRHLLEVMLSSGDLVLQLINDILDLSKVESGVMKLETTKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPMGKGEECHKKSMADNSTVSVHGLQGGTCLPAPQNGLRGQKHGDRNHLHCDAPGTPNKSETIMNGNRESKSCSPETTVWIRCDVYDTGIGIPENALPSLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVSSRENHGSTFTFVLPYKVSTSSSNSSTSDDSDELSDEESTDEEMTEGFFQFQPHSFSSLSSSNGSTRMIPNSVRYPSSTDGGSYHIPSNNITPQPQETALRDARSGNATLTSNESQYSLSQINSNLGKERSTNQPDANARFQNANVNSIQRLETKQEDTLEKPSSKLQKTDQGKERSNASSHCRTTSSGSEVTMALEAKILLVEDNKTNIMVAQSMMKKFGQKIDVVTNGIEGVRAVQRRSYDLILMDVFMPVMDGLQATRLIRSFEETGSWEAAVNAGIEPTTPSWTPSSRKRMPIIAMTANTLSESADECYENGMDSFVSKPITFQKLKECLEQYLPQRPL 997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11482122 11488084 - CmaCh01G016830.1 Cma01g01683 287376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01683 997 MobiDBLite consensus disorder prediction 684 698 - -
Cma01g01683 997 CDD REC_hyHK_CKI1_RcsC-like 854 988 - -
Cma01g01683 997 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 670 IPR003594 -
Cma01g01683 997 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 993 - -
Cma01g01683 997 Gene3D - 849 992 - -
Cma01g01683 997 PRINTS Bacterial sensor protein C-terminal signature 597 611 IPR004358 GO:0016310|GO:0016772
Cma01g01683 997 PRINTS Bacterial sensor protein C-terminal signature 615 625 IPR004358 GO:0016310|GO:0016772
Cma01g01683 997 PRINTS Bacterial sensor protein C-terminal signature 632 650 IPR004358 GO:0016310|GO:0016772
Cma01g01683 997 PRINTS Bacterial sensor protein C-terminal signature 656 669 IPR004358 GO:0016310|GO:0016772
Cma01g01683 997 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 993 - -
Cma01g01683 997 Gene3D - 435 677 IPR036890 -
Cma01g01683 997 SUPERFAMILY CheY-like 852 994 IPR011006 -
Cma01g01683 997 MobiDBLite consensus disorder prediction 780 807 - -
Cma01g01683 997 ProSiteProfiles Response regulatory domain profile. 853 992 IPR001789 GO:0000160
Cma01g01683 997 MobiDBLite consensus disorder prediction 710 753 - -
Cma01g01683 997 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155|GO:0007165
Cma01g01683 997 Coils Coil 181 208 - -
Cma01g01683 997 Gene3D PAS domain 205 335 - -
Cma01g01683 997 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Cma01g01683 997 ProSiteProfiles Histidine kinase domain profile. 378 672 IPR005467 -
Cma01g01683 997 MobiDBLite consensus disorder prediction 808 832 - -
Cma01g01683 997 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 671 IPR036890 -
Cma01g01683 997 Coils Coil 92 112 - -
Cma01g01683 997 Coils Coil 342 362 - -
Cma01g01683 997 SMART HKATPase_4 482 672 IPR003594 -
Cma01g01683 997 Pfam Response regulator receiver domain 854 921 IPR001789 GO:0000160
Cma01g01683 997 Gene3D - 336 434 - -
Cma01g01683 997 MobiDBLite consensus disorder prediction 780 844 - -
Cma01g01683 997 CDD HATPase_EvgS-ArcB-TorS-like 487 669 - -
Cma01g01683 997 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Cma01g01683 997 SMART REC_2 852 988 IPR001789 GO:0000160
Cma01g01683 997 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Cma01g01683 997 MobiDBLite consensus disorder prediction 673 698 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01683 Cma09g00387 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01683 Cma-Chr1:11482122 Cma04g02142 Cma-Chr4:14984183 1.18E-53 dispersed
Cma01g01683 Cma-Chr1:11482122 Cma09g00387 Cma-Chr9:1623094 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34357 PF02518 HATPase_c 7.60E-28 CL0025 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01683 - - cmos:111445954 1858.96