Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01688 ATGGAGCTTGGTGATGCTTATGGTGATTTGGGGGTGGGGATGACTCGGAAGAGAAAGAGAGATGATGGAGGAAACCTGTTGAGCAACTTCTCTTTGGATGATCTCAATCAAGACATTCTTGAACGGGTGCTGTCGAGGCTACCGACCTCGGCATTCTTTCGCCTTTCTTCAGTGTGCAAAAGATGGAAATCGGTTGCAGCTTCTTCGAGTTTCAAGTATGCGTGCTCCGACGTTTCTGTACGCGATCCCTGGTTTTTCATGGTGGATTCACATCTCGACCGCTCGATTGTTTTCGACTCGACTGAGAAAAGTTGGAAGAAACTTAACTATCCACACGTCCTTCAGAGTCGTCATCATAACTTGATGCCGGTTGCAGCCTCTGGTGGTTTGATCTGTTTTCGCAATTCGTCGGGCAACTTTATTGTGTCGAATCCTTTAACAGGCTCATGTAGTGAACTTCCTCCTGTGGAACTTGACCAGAAAAATCAATATCTTCATGCCATCGTCATGAGCTCGGACCGTGACGGTTGCAAGGGCTCTTACAAGCTTATACTGGTCCATGGCCAACTTCCGAAGCTCCGGTTCAAAGTCTACCGTTCGACCGTTGGTTGTTGGGACGACAATGTTACCTTGAGTAGAAAAGTTGACGATTCTATCGAATTCAACTTCAATGATGATACTGTTGTGTACTTCCTCAGTAGGACAGGAAATGTAGTATCTACAAACATGCAGAGAAGCCCATCGAAGCAGTACTCGTCGGTCATTGTGAACAAGAATGGCGAGGATCTCATCTACTTCATTAGCTCGTCCGGGACTATCATGGCTTGTAATCTCAACAAGCGATGCTTCGTGGAGTACCCCAGGCTCTTGCCTGTCTTTTCGGAGTACTCCATCGACGTAGTCGAATGTCGAGGTGAGATGCTAGTTGTTATGTTATCTGAGTTTCTTGAAACTGCAAGCCTTAGAGTTTGGAGATACGACGAGGATGCTCGAACTTGGCATCAAATTGCAGCATTGCCTCCTGCAATGTCGCATGAATGGTATGGCAAGAAGATCGATATTAACTGCGTTGGAGCTGGCGATCAGATACTCATATGCATGAACTCTAACGAGCTTTATACGTATCTACTATGCGATCTCGTCAAGAATCAGTGGACCGAATTGCCCAAATGCAACATGAACGGTGAAGCTGTGGAGTTCATGTCTGCCTTTTCATTCGAGCCTAGGATTGAGGCTTGTAGATTTCTAAGTATAAATTCGCAAAGAGAAGAAAATTTGTTATCAGACGAGGAAGAAGAAATGGAATCGGAGGATTCATTGATATCAAGATTGGAGGAATTGCAAAAAGATTTGAGGAAGAAACAGAGATTCGAGGAAGCAGTTTCCACCACTATATCTCTTCTTCAAGATTGCTATCCTACTGCTTCTCCTTCTCTACGCAAATCGGTCCTTCATCTTTCCCCTCTTTTTATTCAATTCTATTCCGTAATTTGCCGAGTTGCAACAGTATTGAAGACAAGATATACGGCCCCAGGGTTTTGGTGTTCTGGTCTCAAGCTTTTTGAGGTTTCTTTGAGTCTGGTCTCTGATCCTTCTGAGAAACAACAATTACAGGCTAACATAGCTCATGCCAAGGAAATTCTGCACCAAATTGACAATCCATCTTCACCGTCACAACGTACTTCAAATGGAGGCTATCTTTTTGAGGGCCATCTCACTGTTGATCCGGAGCCACCCCAGCCCCAGTGGCTGGTGCAATCGAACCTCTTGACAGCCGCTGCAGCTACGCTATTTAACGCTGAATCTTCTCAAGCTCTGGTTGACAACAACAACAATTCCGAGAATACTACTGACTTCCTTCAAGCGTTCATGGATTTGGAAACGGTTAGCGGGCCTCCAAAAGTACCTCCTGCAAGTAAAGAAGTCGTCGAGAAACTTCCTGTAATTACTGTGACAGAGGAAGTTCTTGCCAAGCTAGGAAGAGATGTACAATGTGCCATTTGCAGGGAAAACTTGGCTGTTGATGACAAGATGCAGGAATTGCCTTGCAAGCACACATTCCACCCACCTTGTTTGAAGCCATGGCTGGATGAGCATAACTCCTGCCCGATCTGTCGACACGAATTGCCCACCGACGACCATAAATATGAGAGCTGGAAGGAGCGAGAGAAGGAGGCAGAAGAAGAGAGAAAAGGAGCTGCAAATGCTAACTTTGGTCTGTACTTTCCCACGCAAAATATGGAAACATCCGTCGCCTCCGCCGCCGGCGCCACCATTTTGTCGTCCTCTTCTGCCGTCTTTGGCCGCCGATTTCGACGGGTTCTCCTATCCAACAAATATAACAGACGCAAATATACTCTCAAGAGAGGAATTGAAGATTGTTTTCCCCTTTCCACTGAATTTTCAGGTCGAACTGCTACACTGGTATCGGGAACTTCACTTGTTTCTATGAAGACGATGATCTCGAATGGATATGCCGGCAGAGGAAGCAGTAGAAATTCAAATATCAACAAGATTTACAAGCGATTGGAATCTTGTTTGGTGGTACCGCCGCCAAAAGGTAAGCTACCTCGCGCTATCATCAAGTTCCTCGGCGGCGCTTTCATCGGAGCTATTCCTGAAGTTACTTACAGCTACCTAATCGAGCTTTTGGCAAAGGAAGGGTTTCTGATAATCTTAGTCCCTTACAATGTGACTTTCGATCATGCTGATGCAACGAGACAAGTTTTTGAGAGATTTCATGCTTGTTTGGACACCATTTTAGCCTCCGGATTGCCCGATGAAGATATTTCATCTGCTCAACTCGTTAATCTTCCTCTATTTTCTGTGGGACATAGCAATGGCGCTCTTCTTCAAGTACTCACAGGGAGCTATTTCGCTGAAAAGATACCGAAGGCTAATGCTATAATCTCCTTCAACAACAGGCCAGCAACAGAGGCTGTTCCTTACTTTGAGCAGTTGGGCCCTTTAACCAGTCAGATGATGCCAGTTGTACAAGCTTCGCCAGTTTACTCAATAGCTAGGAGTGTCTCAGAGGATGCATGGAAGATGTTGCTTGATGCTGCTGGAGCTATTGTTCCTGACAGAGATCTAGAAGTCTTGAACTCTCTGACCAAATTTGTTGATCAGTTACCCTCAGTGGTAAAGCAGATGACAGAAGGGGTATCAGAGTTCAAACCAACTCCATCTGAGAATCGAGATTGCTTCAAGTGCTCTTACAATGTCCAACACACCCTCCTGGTGAAGTTCAGTTCAGACATGATTGACGAGACAGATCTACTCGAAGAAACTCTGAAACCACGCATCGAATCTATTAACGGCACGATCGAGAAGATCCAGTTAACCGGTAACCACCTCACACCATGCATACAGGAGCCAAAGTGGGAGGTAGGTAAGTTGTACACTCCTGCAGATGCGGTTGCGCAGGCTCTTAAATCTGTATCCTTGAATGAAACAAAAGAGGTTGCTAAAACCTTAACCAACTGGTTTCACCGTTTTGATGAAGCCTAA 3510 45.41 MELGDAYGDLGVGMTRKRKRDDGGNLLSNFSLDDLNQDILERVLSRLPTSAFFRLSSVCKRWKSVAASSSFKYACSDVSVRDPWFFMVDSHLDRSIVFDSTEKSWKKLNYPHVLQSRHHNLMPVAASGGLICFRNSSGNFIVSNPLTGSCSELPPVELDQKNQYLHAIVMSSDRDGCKGSYKLILVHGQLPKLRFKVYRSTVGCWDDNVTLSRKVDDSIEFNFNDDTVVYFLSRTGNVVSTNMQRSPSKQYSSVIVNKNGEDLIYFISSSGTIMACNLNKRCFVEYPRLLPVFSEYSIDVVECRGEMLVVMLSEFLETASLRVWRYDEDARTWHQIAALPPAMSHEWYGKKIDINCVGAGDQILICMNSNELYTYLLCDLVKNQWTELPKCNMNGEAVEFMSAFSFEPRIEACRFLSINSQREENLLSDEEEEMESEDSLISRLEELQKDLRKKQRFEEAVSTTISLLQDCYPTASPSLRKSVLHLSPLFIQFYSVICRVATVLKTRYTAPGFWCSGLKLFEVSLSLVSDPSEKQQLQANIAHAKEILHQIDNPSSPSQRTSNGGYLFEGHLTVDPEPPQPQWLVQSNLLTAAAATLFNAESSQALVDNNNNSENTTDFLQAFMDLETVSGPPKVPPASKEVVEKLPVITVTEEVLAKLGRDVQCAICRENLAVDDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELPTDDHKYESWKEREKEAEEERKGAANANFGLYFPTQNMETSVASAAGATILSSSSAVFGRRFRRVLLSNKYNRRKYTLKRGIEDCFPLSTEFSGRTATLVSGTSLVSMKTMISNGYAGRGSSRNSNINKIYKRLESCLVVPPPKGKLPRAIIKFLGGAFIGAIPEVTYSYLIELLAKEGFLIILVPYNVTFDHADATRQVFERFHACLDTILASGLPDEDISSAQLVNLPLFSVGHSNGALLQVLTGSYFAEKIPKANAIISFNNRPATEAVPYFEQLGPLTSQMMPVVQASPVYSIARSVSEDAWKMLLDAAGAIVPDRDLEVLNSLTKFVDQLPSVVKQMTEGVSEFKPTPSENRDCFKCSYNVQHTLLVKFSSDMIDETDLLEETLKPRIESINGTIEKIQLTGNHLTPCIQEPKWEVGKLYTPADAVAQALKSVSLNETKEVAKTLTNWFHRFDEA 1169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11508066 11518863 + CmaCh01G016880.1 Cma01g01688 287381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01688 1169 ProSiteProfiles Zinc finger RING-type profile. 665 706 IPR001841 -
Cma01g01688 1169 SMART ring_2 665 705 IPR001841 -
Cma01g01688 1169 Gene3D - 26 72 - -
Cma01g01688 1169 Pfam F-box domain 33 70 IPR001810 GO:0005515
Cma01g01688 1169 ProSiteProfiles F-box domain profile. 29 74 IPR001810 GO:0005515
Cma01g01688 1169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 628 712 IPR013083 -
Cma01g01688 1169 Coils Coil 716 736 - -
Cma01g01688 1169 CDD RING-H2_RNF126_like 664 706 - -
Cma01g01688 1169 Gene3D - 85 410 IPR015915 GO:0005515
Cma01g01688 1169 PANTHER OS04G0405600 PROTEIN 816 1166 IPR010765 -
Cma01g01688 1169 SUPERFAMILY Galactose oxidase, central domain 95 392 IPR011043 -
Cma01g01688 1169 PANTHER INITIATION FACTOR 4F SUBUNIT (DUF1350) 816 1166 - -
Cma01g01688 1169 SUPERFAMILY RING/U-box 647 712 - -
Cma01g01688 1169 SMART fbox_2 35 75 IPR001810 GO:0005515
Cma01g01688 1169 Pfam Protein of unknown function (DUF1350) 856 1163 IPR010765 -
Cma01g01688 1169 SUPERFAMILY F-box domain 25 87 IPR036047 GO:0005515
Cma01g01688 1169 Coils Coil 427 454 - -
Cma01g01688 1169 Pfam Ring finger domain 664 706 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01688 Cma09g00382 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01688 Cma-Chr1:11508066 Cma14g01072 Cma-Chr14:5874072 6.98E-35 dispersed
Cma14g02092 Cma-Chr14:14474830 Cma01g01688 Cma-Chr1:11508066 1.97E-16 dispersed
Cma15g00216 Cma-Chr15:1064094 Cma01g01688 Cma-Chr1:11508066 1.04E-14 dispersed
Cma09g00383 Cma-Chr9:1601671 Cma01g01688 Cma-Chr1:11508066 0 transposed
Cma01g01688 Cma-Chr1:11508066 Cma09g00382 Cma-Chr9:1600114 7.30E-51 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01688 - - cmax:111480382 789.26