Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01695 ATGCACAGAACAATCAGAAAGAACAAGAAATCAATCACAGAAATTTCCAAATTAGAATCAACAATGGCGGCGAAAGTGACGAAGGTGATCGCAAGCATCGAGCAATCGATTCCGGTGACGCAGCACAACGCTCAAGTCATCGACGTGGAGTCAATAAAATGCGAGTGTTGTGGATTGACAGAGGAGTGTACTCCAGCGTACATCGCTCGAGTGCGCGAGAGGTATGAAGGGCGTTGGATTTGTGGACTCTGTGCGGAGGCTGTGAAGGACGAATCTATCAGATCTCAGAGCAAAATTACCACCGGTGAAGCGGTGAAGAGGCACATGAAGTTTCACAAAGCATTCAAATCTTCAATTCCGCCGGTGAATCCGACTGAGGATTTGATTTCGGCTATGAAACAGCTTTTCCGTCGCTCTCTGGACTCTCCAAAGAAAGACGCCTCGCGATCGCTTGGCCGTTCAAATAGCTGTTTCTCCTCCATGCCGAGGCGGCGAAGTCATTACGATTAG 510 48.43 MHRTIRKNKKSITEISKLESTMAAKVTKVIASIEQSIPVTQHNAQVIDVESIKCECCGLTEECTPAYIARVRERYEGRWICGLCAEAVKDESIRSQSKITTGEAVKRHMKFHKAFKSSIPPVNPTEDLISAMKQLFRRSLDSPKKDASRSLGRSNSCFSSMPRRRSHYD 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11539186 11543774 + CmaCh01G016950.1 Cma01g01695 287388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01695 169 MobiDBLite consensus disorder prediction 141 169 - -
Cma01g01695 169 PANTHER OS01G0745000 PROTEIN 35 161 IPR012876 -
Cma01g01695 169 PANTHER DUF1677 FAMILY PROTEIN 35 161 - -
Cma01g01695 169 Pfam Protein of unknown function (DUF1677) 49 138 IPR012876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01695 - - - csv:116403240 260.381
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01695 Cma09g00374 CCT
Cma01g01695 Cma09g00374 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01695 Cma-Chr1:11539186 Cma08g00805 Cma-Chr8:4864787 1.99E-40 dispersed
Cma01g01695 Cma-Chr1:11539186 Cma10g00775 Cma-Chr10:3550232 6.29E-36 wgd
Cma01g01695 Cma-Chr1:11539186 Cma11g00741 Cma-Chr11:3609126 1.46E-34 wgd
Cma01g01695 Cma-Chr1:11539186 Cma09g00374 Cma-Chr9:1562498 2.08E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g175 . . Bda01g00645 . Bpe02g01565 Bpe02g00516 . Bma01g02188 . . Cma01g01695 . Car09g00323 . Sed08g1808 . Cpe06g00266 Bhi04g01527 Tan02g1574 Cmetu03g1182 . Hepe08g1443 . Lcy13g2230 Cla05g01638 Cam05g1748 Cec05g1757 Cco05g1813 Clacu05g1739 Cmu05g1624 Cre05g1751 . . Cone17ag0952 Cone20ag0296 Lsi04g01376 . . . Blo17g00270 Blo18g00256 Bda01g01352 Bda13g01584 Bpe14g00284 . Bma01g00906 . Sed13g1923 . Cmo09g00376 Cma09g00374 . Car01g01309 . . Cpe02g00298 Bhi09g03066 Tan01g3497 Cmetu07g1235 . Hepe01g1925 Mch11g0463 . Cla08g00980 Cam08g1429 Cec08g1007 Cco08g1130 Clacu08g1134 . Cre08g0918 Lsi08g00827 . Chy03g00650 Cme07g00166
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008492 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 2 1 2 0 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01695 Cma_Chr01 FPKM 3.130263 2.948163 21.892614 20.3258 15.478148 16.97249 14.561213 132.58046 124.733749 126.156113