Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01697 ATGGGTGTGAAGAGGAAGATGACGTGGAAATCGATGATCGTTTCGAGTTGTTACAAGGCGGAGTCCGACGACCACGACCGGCACCTGGTTTCCAAGAAAGGTTCGTCGCAGAGGCTGTCGCTGTCGGACGCGAGTAACCCGAGCTCGCCCTTGTCCATTGACGACCTGTCCAATTCTCTCGTCGGACCCAAGCTTCATATTTTCTCATTCGCTCAACTTCGAACCATCACTCACAATTTTGCCTCATCGAATTTGCTTGGAGAAGGCGGGTTCGGTCCGGTCTACAAAGGGTTTGTCGACGATAAGACTAAACCGGGTTTGGAGGCTCAGCCGGTCGCCGTTAAATTGCTCGACCTCCACGGATCTCAAGGCCATAAAGAATGGCTGGCAGAGATAATAATTTTGGGTCAAATGAGGCATCAAAATTTGGTGAAACTTATCGGTTATTGCTGGGAAGAAGAATACAGACTTTTGGTTTATGAGTATATGGCTCGAGGCAGTTTAGAAAACCAGCTTTTCAGAAAGTATTCAGCTGCTTTGCCTTGGTCAACGAGGATGAAAATCGCTTTAGAAGCTGCCAAAGGCCTTCAATTCCTTCACGAAGCCGATCCTCCCGTTATTTTTAGAGATTTCAAAACCTCCAATATTCTTCTCGATTCTGATTATACGACGAAGCTCTCGGATCTTGGGTTGGCTAAAGATGGTGTTGACTGCGAAGACCAACAGGACATGACTTGTATTATGGGCACTCAAGGCTATGCCGCTCCCGAGTACGTCAAATCCGGCCATTTGACGACAATGAGTGATGTGTACAGTTACGGGGTTGTTTTGGTAGAGCTGCTGACGGGGAAGCCGTCGATGGACCGAAACACGGGCGAGTTTCTAGTGGACTGGGTCAAGCCACTTCTAAAGGACTCCAAACGGCTCTGCCGAGTCATGGACCCAAGGCTTGAGGGGCTGTACTCGGCCGATGGCGCTCGTAAGGCTGCGGCCTTGGCCCATAAATGTCTCAGCCGCAACCCCAAGAGGCGACCGCCAGCGACGGAAGTCGTTAACGTGTTGAAGTCCTTGCAGGACATTAATGACGTGTTTACGGCGCCGTTTGTGTACGTGGTGGAGGATTGCTGCGTGGAGGAGGGGAAGAAGGAAAATGGGCTTGGTCTTGGGCTTGGGCTTGGTGGGCTTGGATGGAAAAACTGGAGGCCCATATCTGTATGA 1218 50.57 MGVKRKMTWKSMIVSSCYKAESDDHDRHLVSKKGSSQRLSLSDASNPSSPLSIDDLSNSLVGPKLHIFSFAQLRTITHNFASSNLLGEGGFGPVYKGFVDDKTKPGLEAQPVAVKLLDLHGSQGHKEWLAEIIILGQMRHQNLVKLIGYCWEEEYRLLVYEYMARGSLENQLFRKYSAALPWSTRMKIALEAAKGLQFLHEADPPVIFRDFKTSNILLDSDYTTKLSDLGLAKDGVDCEDQQDMTCIMGTQGYAAPEYVKSGHLTTMSDVYSYGVVLVELLTGKPSMDRNTGEFLVDWVKPLLKDSKRLCRVMDPRLEGLYSADGARKAAALAHKCLSRNPKRRPPATEVVNVLKSLQDINDVFTAPFVYVVEDCCVEEGKKENGLGLGLGLGGLGWKNWRPISV 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11551936 11553806 - CmaCh01G016970.1 Cma01g01697 287390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01697 405 PANTHER OS01G0588500 PROTEIN-RELATED 26 381 - -
Cma01g01697 405 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL12-RELATED 26 381 - -
Cma01g01697 405 Pfam Protein kinase domain 82 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01697 405 MobiDBLite consensus disorder prediction 34 50 - -
Cma01g01697 405 Gene3D Transferase(Phosphotransferase) domain 1 163 367 - -
Cma01g01697 405 ProSiteProfiles Protein kinase domain profile. 80 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01697 405 Gene3D Phosphorylase Kinase; domain 1 61 162 - -
Cma01g01697 405 SUPERFAMILY Protein kinase-like (PK-like) 58 354 IPR011009 -
Cma01g01697 405 MobiDBLite consensus disorder prediction 28 50 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01697 - - - cmax:111480850 792.727
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01697 Cma-Chr1:11551936 Cma09g00372 Cma-Chr9:1552313 0 dispersed
Cma01g01697 Cma-Chr1:11551936 Cma10g00766 Cma-Chr10:3523232 6.01E-154 wgd
Cma01g01697 Cma-Chr1:11551936 Cma11g00733 Cma-Chr11:3588221 3.55E-162 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g173 . . . . . . . . . . Cma01g01697 . Car09g00319 . . Cpe07g00604 . . . . . . . . Cla05g01635 . . . . . . Cone4ag1704 Cone7ag1620 Cone17ag0951 Cone20ag0295 . . . . . . . . . . . . . . Cmo09g00372 . . Car01g01311 . . . Bhi09g03070 . . . . Mch11g0459 . . . . . . . . . . . Cme07g00169
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000600 4 3 3 2 3 0 5 0 0 3 3 0 5 4 0 5 0 0 5 0 3 0 1 0 0 3 1 0 0 3 56
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68298 PF00069 Pkinase 6.70E-47 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01697 Cma_Chr01 FPKM 12.7921 13.781169 1.335061 2.598972 0.0 0.645407 0.665167 14.856717 16.24852 13.554007