Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01699 ATGCTGTCTCATTTGAGTAGAAGTATGGGGTTACTCTGCAGCAGAAATCGTCGTTACAATAAACAAGATACTGAAGAGAATGTGCAGATAAAATTGTTGTTCCAAACTGGGTTTGATGAGGCAGAGCTGAAGAGCTATATTCCAGTCATTCATGCAAATGTGTATCAGACTATAAAAGTATTACACGATGGTTCGAAGGAGCTCGCTCAAAATGATAAAGAGTTCTCGAAGTATGTTTTGTCCAGTGAAAATAAGGACATTGGTGAGAAATTATCCGACATTGGCAGTAGATTGGATTACCCGCGTTTGACTAGGGAGCATGCACACGATATAGAGACTCTATGGAACGATGCTGCAATTCAGGAAACGTATGCTCGTGGTAACGAACTACAGGTTCCAGATTGTGCACATTATTTCATGGAAAATTTACAGAGATTATCTGATGTAAATTACATTCCAACTAAGGAAGACGTGCTCTACGCAAGAGTTCGTACAACGGGTGTTGTCGAAATCCAGTTTAGTCCCGTTGGAGAAAATAAAAAGAGCGGAGAAGTGTATCGACTCTTTGATGTCGGTGGACAGAAAAACGAGAGGCGGAAATGGATTCATCTTTTTGAAGGTGTTACAGCAGTAATCTTTTGTGCTGCTATTAGTGAGTATGATCAAACACTTTTCGAGGACGAACAGAAGAACCGAATGATGGAGACAAAGGAACTTTTTGAGTGGGTTCTGAAACAAGAGTGTTTTGAGAAAACGTCGTTCATGCTTTTTCTCAACAAGTTCGATATATTCGAGAAAAAGGTTCTACAAGTCCCTCTTAGTGTGTGTGAATGGTTCAAAGATTACCAGCCGGTTTCGACTGGAAAACAAGAGATCGAGCATGCCTACGAGTTCGTGAAGAAAAAATTCGAGGAGTTGTATTTTCAGACGACGTCACCAGATCGAGTAGATCGGGTGTTTAAGCACCTCTTTCAATTCTCTACGACATTCTTCTCCTTGTTTTCTCTCGCGTTGAAGCATCAAATTCTCTTTCGTAATGGTTTGCTGACTTTCAATGTGCTTGAAACCCTAGCTGATTTCGTCGCAAACATCTGGATCTCGCTGGGAAATTTGTATCTGGCTGGAAGTTTAGCACTTCAAGAAGCCTTTAATTGCTTTTCAAAGATCGCTGGTGCCCTGTTCCTATGGTGCTCAGAAGTTAGGAGCATCCGTTCTGGTAGACTTGGGTCTAGAGGATTTCACTTTAGCTTTAATTTGGGAATGAAACATTCCAAGCCATTTTTTCTTGGCAAGATTGGCGGTTTTGCAACGAGACTTTTGGGTAAAGAAGCTGGAAGGCAGCAGTTGCATCCTTTGCTCTCAGTAGCGGCTGCTTTAGTTCCTCCTCTTAACAACTTGGCCAGCAGATCATCAGATGTTATAGCTGTTCCATTGGAGAATAATGAATTGCATGTCCATGGATGCACGGAGCAGAAACCTTGCGAAGTTGCGTATGGAGCACCTGCTGGTTTAACGTTTCCTGACGTGAATTGGACACGGCATGCAATTGAGCCCCAAACTGGCATTGAGTTTCCCGTGGTACTAGATAACATTCTATCCGGAGAAAATAATTCCAGCTTGAGTTCAGAGGTTCTTGTTGGAACTGGATCCCGGATTGTAAAAATAGTCAAAATTAAATCCCTGAAGGTCTATGCTTTTGGCTTTTATGTTCATCCAAACTCTGTCTGTGAGAAGCTTGGTCCAAAATATGCTTCTAGTTCAGCAGATGAATTAAATGAGCGTCGAGATTTTTATGAAGACCTTCTGAGGGAGGATATTAATATGACCGTCAGGCTTGTTGTTAATTGCAATGGGATGAAAATTAATACTGTAAGAGATGCTTTTGAGAAATCACTTAGAGCACGATTGTTGAAGGCAAATCCAGAAACTGATTACGATTGTGTGAGGACATTTGGTTCTCTCTTCACCAAAGACATTCCGTTACCTTTGTTCAACGTTCGAAATGACCACTTTATCCAATTGAGCCGAGCCGAGCCGAGCCCAAAGTCGGATTTGGTGGTCTCCCAATTTCAACTATTCCCTCCGTGGGCCCCACCACCTTTCTTGTGGATAAGCATCGCAACACTCCGTTTTATGCTTCGACTCGCCACGTCATTGCCTAATAATCCGGTGCTCCCAGTTCGCGAAGTCGTCATGTCGATTGCTTTGGATAGTGTTCAGCGGGTTGAGGATAAAGGCTCTGGATTCTCGCCGGAGGATTTGGGTTTTGGATCGGTGTTTGACAGGTTGGATACTGGGGATGTGGATCACGGTGTTGAAGGCTTTGAAAAGGAGGCTGAGGAGTCCAATACTTGCAGCTCGGCTTCCAGTTCTTCTTCTTCGATCGGGAGGAACAGTGATCAGTCCGCCAGATCGTCGGACGGTGAGGAGAGTGGCGAGAGTGATGAGGTTCAGAGCTCGTATAAGGGGCCGCTGGATATGATGGACTCCTTGGAGGAGGTTTTACCTGTCAGAAAAGGTATCTCAAAGTTCTACAATGGAAAATCAAAGTCTTACACAAGTCTGGCTGATGCCTCTGTTTCCTCCATGAAGGAGATTGCAAAGCCAGAGAATGCCTATTCCAAGAAACGAAGGAATCTCATGGCTTACAATCTTGTGTGGGAGAAGAACCGGAGTTTCCCCCTCAAGAATAACGGTGGTGGGATATCAAAAAGACCCATCAGCTCAAGCAGAAGCTCCCTGGCTTTGGCTGTTGCTATGAGCAGTTCCGAAAGTAACTGCAGTGAGGATTCAAACTCCAGCTCATATTCAGGCTCTCCACCGCCTCGCCCACCTCTGCACCCACAATCTAGAGCATCTAACTGCAATCTGGCTTCCATGGTGCCACCTCAGCGAAATTTCTCCACTTGGCGTTCATATTCCTTGGCTGATTTACAAGAGTGCGCAACCTCGGCTAATAAGGCCAATCTAACAAATCTCAACTGA 2985 44.15 MLSHLSRSMGLLCSRNRRYNKQDTEENVQIKLLFQTGFDEAELKSYIPVIHANVYQTIKVLHDGSKELAQNDKEFSKYVLSSENKDIGEKLSDIGSRLDYPRLTREHAHDIETLWNDAAIQETYARGNELQVPDCAHYFMENLQRLSDVNYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQKNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFEWVLKQECFEKTSFMLFLNKFDIFEKKVLQVPLSVCEWFKDYQPVSTGKQEIEHAYEFVKKKFEELYFQTTSPDRVDRVFKHLFQFSTTFFSLFSLALKHQILFRNGLLTFNVLETLADFVANIWISLGNLYLAGSLALQEAFNCFSKIAGALFLWCSEVRSIRSGRLGSRGFHFSFNLGMKHSKPFFLGKIGGFATRLLGKEAGRQQLHPLLSVAAALVPPLNNLASRSSDVIAVPLENNELHVHGCTEQKPCEVAYGAPAGLTFPDVNWTRHAIEPQTGIEFPVVLDNILSGENNSSLSSEVLVGTGSRIVKIVKIKSLKVYAFGFYVHPNSVCEKLGPKYASSSADELNERRDFYEDLLREDINMTVRLVVNCNGMKINTVRDAFEKSLRARLLKANPETDYDCVRTFGSLFTKDIPLPLFNVRNDHFIQLSRAEPSPKSDLVVSQFQLFPPWAPPPFLWISIATLRFMLRLATSLPNNPVLPVREVVMSIALDSVQRVEDKGSGFSPEDLGFGSVFDRLDTGDVDHGVEGFEKEAEESNTCSSASSSSSSIGRNSDQSARSSDGEESGESDEVQSSYKGPLDMMDSLEEVLPVRKGISKFYNGKSKSYTSLADASVSSMKEIAKPENAYSKKRRNLMAYNLVWEKNRSFPLKNNGGGISKRPISSSRSSLALAVAMSSSESNCSEDSNSSSYSGSPPPRPPLHPQSRASNCNLASMVPPQRNFSTWRSYSLADLQECATSANKANLTNLN 994
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11561030 11575003 + CmaCh01G016990.1 Cma01g01699 287392

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01699 994 Pfam G-protein alpha subunit 29 324 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma01g01699 994 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT 29 322 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cma01g01699 994 SUPERFAMILY Transducin (alpha subunit), insertion domain 38 163 IPR011025 GO:0007165
Cma01g01699 994 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 322 IPR027417 -
Cma01g01699 994 CDD G-alpha 29 321 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma01g01699 994 Gene3D - 39 164 IPR011025 GO:0007165
Cma01g01699 994 PRINTS Plant G protein alpha subunit signature 63 77 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cma01g01699 994 PRINTS Plant G protein alpha subunit signature 241 252 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cma01g01699 994 PRINTS Plant G protein alpha subunit signature 48 61 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cma01g01699 994 PRINTS Plant G protein alpha subunit signature 87 101 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cma01g01699 994 PRINTS Plant G protein alpha subunit signature 171 186 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cma01g01699 994 PRINTS Plant G protein alpha subunit signature 307 319 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cma01g01699 994 PRINTS Plant G protein alpha subunit signature 290 305 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cma01g01699 994 Coils Coil 990 994 - -
Cma01g01699 994 Gene3D - 29 323 IPR027417 -
Cma01g01699 994 SUPERFAMILY Chalcone isomerase 516 668 IPR036298 GO:0016872
Cma01g01699 994 MobiDBLite consensus disorder prediction 776 825 - -
Cma01g01699 994 Gene3D - 512 685 IPR016088 -
Cma01g01699 994 MobiDBLite consensus disorder prediction 781 802 - -
Cma01g01699 994 Pfam Chalcone isomerase like 544 658 IPR016087 GO:0016872
Cma01g01699 994 ProSiteProfiles G-alpha domain profile. 7 354 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma01g01699 994 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 29 322 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma01g01699 994 SMART galpha_1 13 343 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma01g01699 994 MobiDBLite consensus disorder prediction 924 957 - -
Cma01g01699 994 PRINTS Alpha G protein (transducin) signature 208 236 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma01g01699 994 PRINTS Alpha G protein (transducin) signature 186 203 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma01g01699 994 PRINTS Alpha G protein (transducin) signature 254 263 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma01g01699 994 PRINTS Alpha G protein (transducin) signature 151 173 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01699 K19729 GNAT3; guanine nucleotide-binding protein G(t) subunit alpha 3 - csv:101216232 599.742
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01699 Cma-Chr1:11561030 Cma06g00618 Cma-Chr6:3013035 1.99E-45 dispersed
Cma08g00347 Cma-Chr8:1983439 Cma01g01699 Cma-Chr1:11561030 1.87E-18 dispersed
Cma10g00677 Cma-Chr10:3074539 Cma01g01699 Cma-Chr1:11561030 9.37E-07 dispersed
Cma12g00297 Cma-Chr12:1520118 Cma01g01699 Cma-Chr1:11561030 2.82E-11 dispersed
Cma12g01276 Cma-Chr12:9930598 Cma01g01699 Cma-Chr1:11561030 2.38E-07 dispersed
Cma17g01178 Cma-Chr17:8176528 Cma01g01699 Cma-Chr1:11561030 1.57E-18 dispersed
Cma20g00879 Cma-Chr20:4206037 Cma01g01699 Cma-Chr1:11561030 3.25E-28 dispersed
Cma09g00371 Cma-Chr9:1539595 Cma01g01699 Cma-Chr1:11561030 0 transposed
Cma01g01699 Cma-Chr1:11561030 Cma09g00369 Cma-Chr9:1535246 2.49E-120 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g170 . . . Bda03g00122 Bpe02g01563 . Bma04g00110 . . . Cma01g01699 . . . . . . . . . . . . . Cla05g01633 Cam05g1742 Cec05g1751 Cco05g1808 Clacu05g1734 Cmu05g1618 Cre05g1746 . . . . . . . . . Blo18g00259 Bda01g01350 . . Bpe04g00107 Bma01g00908 . Sed13g1913 . . . . Car01g01314 . . Cpe02g00294 Bhi09g03075 Tan01g3482 . . Hepe01g1921 . . . . . . . . . . . . Cme07g00171
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004075 2 3 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 7 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01699 Cma_Chr01 FPKM 13.445896 16.38154 14.914757 14.365702 12.241366 11.339127 12.225474 16.204195 15.127113 14.86641