Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01701 ATGCAGCCAGAACATGAAGGGAAGCTGTCGGCAATGGTGGCTTTGGCCATTGCTGCTGCCATTCTCCAAGCCCATGCAGCCATTCCAGAGATGAATAAGTCTCAACAATTATCTCGACAGATTCACAAGAAGTTAAAGCTTCTTAACAAGCCTGCCGTCCACACCATCTACCCTGCTTTTGACCATCCGGCTCTAAAGAACCACACCATTCAGATGGAACCCAATTGGGGCGTCGGTTGGAAGATTTCAAGTATGGCAAAGAAGTGGGAGATGTCCCAATGGAACCATTCCAATTCGCAGAGAATACAGAAAACTCTGACTCAACGTACACTGGACGGGAGGTATTACAAGCACGCTAGCCATGTGAAGCAGCCAAGAATCGTGGACAATTCGCTGCAGTTGAAGTGTCCAAAGAGAGTCGGAACTTGGGCTAATGAGCCTTTATGTTACTCTACTGATAATTATCAACGAACCTACACTACTGAGACTGTCTTCTTCTACGGCGACCCAGGCTCAATTCTGCAGCAAAACGTGCACAAGGCGAGTCTTCAAAGAAGAGGGTCCTTGTCAGCTGAACCCAAATGGGTTCCTTCCATTACCCAGTCTATGAAGAGGGCGGCCGCCATGGCATTCCCTATTCAGCTTCTTATTCTGGTTTTTCTCTTCTGTGTTAGCGCCGGTGTGGTGGATTCCGATGATGGAGCTACGTTGTTGGAGATAAAGAAATCATTGAGGGATGTGGATAATGTTCTATATGATTGGACAAGCTCACCTTCTTCAGATTACTGTAAATGGAGAGGTGTCACCTGTGACAATGCCACTCTCAATGCTATCACTCTTAATCTTTCTGGTCTCAACCTGGTCGGAGAAATTTCTCCTTCGGTCGGGAAGCTCAAGGGCCTGCAAACTTTGGATTTGAGAGGGAATAGGCTTTCTGGTCAAATTCCTGATGAGATTGGTGACTGTTATTCGTTAATAAATCTGGATTTATCGTTTAATGAGATTTACGGAGACATACCATTTTCCGTTTCGAGGTTGAAGCAACTGGAAATGCTAGTTGTGAAAAATAATAGACTGATTGGACCAATCCCTTCAACCTTGTCTCAGGTTCCAAACTTGAAGGTCTTAGATCTGGCACAGAATAATCTTAGTGGTGAAATACCGAGGCTCATTCACTGGAATGAAGTGCTGCAATATATGGGATTGCGTGGCAACAATTTTGTGGGCACACTGTCTCCAGATATCTGTCAGCTCACTGGCTTATGGTATTTTGATGTGAGAAACAACAGTTTAAGAGGCAGCATACCTCAAACCATAGGCAACTGCACAGCCTTCCAGGTCTTGGACCTGTCATACAATCATCTCACTGGAGAGATACCATTCAACATTGGTTTCCTTCAAGTAGCCACATTGTCCTTGCAGGGTAATCAGTTGTCAGGTCCCATCCCACCAGTAATTGGTCTGATGCAGGGGCTTGCTGTGCTAGATTTGAGCTGCAACATGTTAACTGGTCCAATCCCCTCTATCTTAGGGAATCTGACATACACTGAGAAACTGTACCTGCATAGTAACAAGCTCACTGGTTCCATTCCAGCAGAGCTCGGGAATATGACAAAGCTCCATTATCTGGAACTGAATGATAATCATCTTACTGGGACTATTCCAGCCGAGCTAGGGAAACTAACCGATTTGTTCGATCTAAATGTTGCTAATAACAATCTTGGAGGGCCTATCCCTGATAATCTTAGCTCATGCACAAATCTCAACAGCCTAAATGTGCACGGAAATAAGTTGAACGGAACGATTCCGCTGTCTTTCCAGAGGCTAGAGAGTATGACTTACCTGAATCTGTCCTCAAATGATCTACAAGGTCCTATTTCAGTTGAGCTATCTCGAATTGGCAATTTGGATACATTAGACATTTCAAATAACGAAGTTAATGGCACAATTTCTTCGTCGTTCGGAGATCTCGAACATCTCCTAAAGCTAAATCTAAGCGGGAATCGCTTAACAGGATCTATTCCAGCTGAATTTGGCAATCTAAGAAGTGTAATGGAAATAGATATTTCACACAATCAGCTCTCTGGGTTCATTCCTCAAGAACTGACACAACTTCAAAATCTGCTCTCCTTGAGACTTGAAAACAACAATCTATCCGGGGACGTGAGGTCGTTGATAAACTGCCCGAGTCTTACCGAACTAAACGTATCTAATAACAATCTAGGTGGTTACATTCCCACAAGCAACAACTTCTCTAGGTTCTCATTTGACAGTTTCCTTGGAAATCCTGCCCTCTGTGGATATTGGAATAGCAACATCTATCCCTGTCGTGAGGCTCATACGACCGAGAGAGTGACGTTATCTAAAGCTGCTATCCTCGGGATCGCTCTTGGTGCTCTAGTAATTCTTCTAATGATCCTCCTGACCGTGTGCCGACCGAACAACACAATACCTTTTCCAGATGGGTCACTTGATAAACCAGTTACTTACTCAACTCCCAAGCTAGTAATCCTTCACATGAACATGGCACTTCACGTGTACGAGGATATTATGAGGATGACTGAAAATTTGAGTGAAAAGTACATGATCGGACATGGAGCTTCAAGCACAGTCTACAAATGTGTACTCAAGAATTGCAAACCTGTGGCTATCAAAAAGCTCTACTCTCACCAGCCCCTAAGCATGAACGCATTTGAGACCGAGCTCGAAACTGTCGGTAGCATCAAGCACAGAAATCTAGTCGGCCTCCAAGGATACTCCTTGTCCCCCTCTGGGAATCTCCTCTTCTATGACTACATGGAAAATGGCAGCCTTTGGGACCATCTACATGGCTCTTGTTCTACCAAGAACAAAAAACTTGACTGGGACACTCGGCTTAATATTGCACATGGAGCAGCCCAAGGACTATCATACCTACACCATGATTGTAGCCCTCGTATTATCCACAGGGATGTCAAGTCATCAAACATTCTATTAGACAAGGATTTCGAAGCCCATCTCACTGATTTCGGCATCGCCAAGAGTTTGTGCACCTCGAAGACATATACATCCACTTATATCATGGGAACAATTGGATACATCGATCCAGAGTATGCTCGAACGTCTCGACTTACTGAAAAATCTGATGTTTACAGCTTCGGCATTGTTTTACTTGAACTACTCACTGGAAGGAAAGCTGTAGACAATGAATCAAATCTCCATCAATTGATCTTATCGAAAACAGCCAACAACGCGGTAATGGAGACGGTTGATCCTGAAATAACTGCAACTTCCAAGGATCTTGGAGCTGTAAAGAAGGCGTTTCAGCTTGCTCTCCTGTGTACCAAGAGGCAGCCATCTGATAGGCCAACGATGCACGAAGTAACGCGCGTCATCAGCAGTCTTCTGCCCTCGGCAGCACCACTAAAGCCAATGCCATCTGTTGCATCACTGCCCCCATCTGCAAGAGCCCCTAGCTACAAGGATGAATATGCAAAGCTAAAAACGCCGCACGTGCTGAACTGCCCGTCGATGAGCACCTCAGACGCCCAGCTCTTCCTCAAGTTTGGAGAGGTTATATCACAGAACAGTGAGTAA 3576 44.83 MQPEHEGKLSAMVALAIAAAILQAHAAIPEMNKSQQLSRQIHKKLKLLNKPAVHTIYPAFDHPALKNHTIQMEPNWGVGWKISSMAKKWEMSQWNHSNSQRIQKTLTQRTLDGRYYKHASHVKQPRIVDNSLQLKCPKRVGTWANEPLCYSTDNYQRTYTTETVFFYGDPGSILQQNVHKASLQRRGSLSAEPKWVPSITQSMKRAAAMAFPIQLLILVFLFCVSAGVVDSDDGATLLEIKKSLRDVDNVLYDWTSSPSSDYCKWRGVTCDNATLNAITLNLSGLNLVGEISPSVGKLKGLQTLDLRGNRLSGQIPDEIGDCYSLINLDLSFNEIYGDIPFSVSRLKQLEMLVVKNNRLIGPIPSTLSQVPNLKVLDLAQNNLSGEIPRLIHWNEVLQYMGLRGNNFVGTLSPDICQLTGLWYFDVRNNSLRGSIPQTIGNCTAFQVLDLSYNHLTGEIPFNIGFLQVATLSLQGNQLSGPIPPVIGLMQGLAVLDLSCNMLTGPIPSILGNLTYTEKLYLHSNKLTGSIPAELGNMTKLHYLELNDNHLTGTIPAELGKLTDLFDLNVANNNLGGPIPDNLSSCTNLNSLNVHGNKLNGTIPLSFQRLESMTYLNLSSNDLQGPISVELSRIGNLDTLDISNNEVNGTISSSFGDLEHLLKLNLSGNRLTGSIPAEFGNLRSVMEIDISHNQLSGFIPQELTQLQNLLSLRLENNNLSGDVRSLINCPSLTELNVSNNNLGGYIPTSNNFSRFSFDSFLGNPALCGYWNSNIYPCREAHTTERVTLSKAAILGIALGALVILLMILLTVCRPNNTIPFPDGSLDKPVTYSTPKLVILHMNMALHVYEDIMRMTENLSEKYMIGHGASSTVYKCVLKNCKPVAIKKLYSHQPLSMNAFETELETVGSIKHRNLVGLQGYSLSPSGNLLFYDYMENGSLWDHLHGSCSTKNKKLDWDTRLNIAHGAAQGLSYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCTSKTYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNESNLHQLILSKTANNAVMETVDPEITATSKDLGAVKKAFQLALLCTKRQPSDRPTMHEVTRVISSLLPSAAPLKPMPSVASLPPSARAPSYKDEYAKLKTPHVLNCPSMSTSDAQLFLKFGEVISQNSE 1191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11576522 11589958 - CmaCh01G017010.1 Cma01g01701 287394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01701 1191 Gene3D Transferase(Phosphotransferase) domain 1 933 1133 - -
Cma01g01701 1191 CDD STKc_IRAK 863 1128 - -
Cma01g01701 1191 SUPERFAMILY Protein kinase-like (PK-like) 835 1123 IPR011009 -
Cma01g01701 1191 Gene3D Phosphorylase Kinase; domain 1 828 932 - -
Cma01g01701 1191 ProSiteProfiles Protein kinase domain profile. 857 1129 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01701 1191 Gene3D Ribonuclease Inhibitor 468 777 IPR032675 -
Cma01g01701 1191 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 213 1178 - -
Cma01g01701 1191 Pfam Leucine Rich repeat 727 743 IPR001611 GO:0005515
Cma01g01701 1191 SUPERFAMILY L domain-like 467 776 - -
Cma01g01701 1191 ProSitePatterns Serine/Threonine protein kinases active-site signature. 980 992 IPR008271 GO:0004672|GO:0006468
Cma01g01701 1191 Pfam Leucine rich repeat N-terminal domain 231 271 IPR013210 -
Cma01g01701 1191 Pfam Leucine rich repeat 491 550 IPR001611 GO:0005515
Cma01g01701 1191 Pfam Leucine rich repeat 635 694 IPR001611 GO:0005515
Cma01g01701 1191 SMART serkin_6 857 1129 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01701 1191 ProSiteProfiles Leucine-rich repeat profile. 372 394 IPR001611 GO:0005515
Cma01g01701 1191 ProSitePatterns Protein kinases ATP-binding region signature. 863 886 IPR017441 GO:0005524
Cma01g01701 1191 Pfam Protein kinase domain 860 1122 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01701 1191 Gene3D Ribonuclease Inhibitor 230 393 IPR032675 -
Cma01g01701 1191 SMART LRR_typ_2 657 680 IPR003591 -
Cma01g01701 1191 SMART LRR_typ_2 418 442 IPR003591 -
Cma01g01701 1191 SMART LRR_typ_2 298 322 IPR003591 -
Cma01g01701 1191 SMART LRR_typ_2 705 728 IPR003591 -
Cma01g01701 1191 SMART LRR_typ_2 537 561 IPR003591 -
Cma01g01701 1191 SMART LRR_typ_2 370 394 IPR003591 -
Cma01g01701 1191 Gene3D Ribonuclease Inhibitor 394 467 IPR032675 -
Cma01g01701 1191 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 213 1178 - -
Cma01g01701 1191 SUPERFAMILY L domain-like 257 512 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01701 Cma-Chr1:11576522 Cma16g00736 Cma-Chr16:3881525 5.75E-167 dispersed
Cma19g00668 Cma-Chr19:6995635 Cma01g01701 Cma-Chr1:11576522 2.38E-26 dispersed
Cma01g01751 Cma-Chr1:11812412 Cma01g01701 Cma-Chr1:11576522 8.10E-66 transposed
Cma01g01769 Cma-Chr1:11878759 Cma01g01701 Cma-Chr1:11576522 4.07E-31 transposed
Cma02g01050 Cma-Chr2:6257958 Cma01g01701 Cma-Chr1:11576522 0 transposed
Cma19g00324 Cma-Chr19:3070943 Cma01g01701 Cma-Chr1:11576522 0 transposed
Cma01g01701 Cma-Chr1:11576522 Cma09g00367 Cma-Chr9:1525795 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68299 PF00069 Pkinase 2.00E-45 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01701 K20718 - csv:101214398 1749.56