Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01702 ATGATGATTGCTTGCCTGGATCGGTTTGTAACGGACACCGATTCCCGCCGCCCGCACGACGGCTCTTCCTTGTGCAAAGCTTTAGAGCTTCAACTACAAGGCGGCATCACTACTGACTCCCGGGACATCGGTTTAGCCGGTAAGGATTTCGGTGGGCTACATTCCATTACGCCCTTGGCCTTAGTGAAACCCACCGGTGCCGATGACGTGGCGAAGGTGGTGAAATCAGCCGTACAGTCGTCTAATCTAACGGTAGCAGCTCGAGGAAACGGGCACTCGATCAACGGCCAAGCGATGGCAGATCGAGGCTTGGTTGTTGACATGACGGCGATGGAGAATCATTTCCATGTCGTCTTGAATAATGGGCTGTCGTACGTCGACGTGTCGGGAGGGGCAATATGGGAAGACGTATTGAAACGCTGCGTTTCAGATTACGGATTAGCTCCTAGGTCATGGACGGATTATCTTAGCTTAACAGTCGGTGGGACTTTGTCAAACGCCGGCGTGAGTGGACAGGCGTTCCGGTACGGCCCACAAATATCCAACGTCGCGGAATTGGAAGTGGTGACCGGAACCGGCGACACTCTAATTTGCTCCGAAATGGAAAATTCTGAATTGTTCTTCAGCGTTCTGGGTGGGTTGGGCCAGTTCGGTATCATCACAAAAGCTCGCGTCTTGCTTCAGCCAGCTCCGGATATGGTGAGATGGATTAGATTGGTTTATGCTGAGTTCGAAAGCTTTACACGTGATGCGGAATCGTTGGTACGGCGGCCGGAAGGAGACTCGTTTGATTACGTGGAAGGATTTGTTTTTTCCAACAACGACGACCCATTAACCGGTAGATCAACAGTGCCGTTAGACTCCGACGCGGCTTTCGACAAAGCTCATTTACCGGAAACCGCCGGTTCGGTTCTCTACTGCTTAGAAGTAGCGGTTCACTATCGGAACAACGACCAAGGCGCAATCGTCGACACGGAGGTTCACAGGTTGCTGACCGGGCTTGGGTATATAAAGCCACTGAGATTCCAGGTGGACGTCAGCTACATACAATTTCTGTCACGTGTGAAGCGTGCGGAAGAGGAAGCTATCGCCAATGGCGTTTGGGATACACCTCATCCTTGGCTTAACCTCTTCGTGTCCAAATCTGACATCTCTGATTTTGATCGTGTGGTTTTTAAGTCCCTCCTTCAAAATGGGGTCGGTGGGCCCATGCTCGTTTACCCTCTACTGCGTAGCAGGTGGGACTCTCGGATGTCGGTTGTGTTACCCGAAGGCGAGATATTCTATTTAGTAGCATTGTTGCGCTTCACTCCCCCGAACCCAAAACCTACAATGGTTGACAAATTGGTGGAGCAGAACAGGGAAATTATTCGTCGATGCAAAGAGAATGATATCGACTTCAAACTCTATTTGCCACACTATCATTCGAGAGATGAGTGGAAGCTTCACTTTGGAAACCAATGGAGTAGATTTGTGGAGAGAAAAGCATTATTTGATCCAATGGCCATCCTTGCTCCAGTTGGGATTTCTGGGATTTTTACATCACCACTAGCAGCAGCACACACAACCATCTCAGGTCCGATCAGATCCATTCAAATCTTCTCCTCTCTTTGTTTTCAATTCTTGTTTCCCATTTCACTCTCCTTCTTGATTTTGATTTTGATTTCCCCCCTTTTTGTGTTTGCGAGTTTGATTCTCCGTCCAATTCGGGCCGTTGTTTTTTGTTGCTGGGTTGGGTTTCGTTTTAATCTTCCCCTTCTAGGGTTTCACTGCCTTTGGGCGGGAATCGTACTTGGAGGAGGAAATGCGTGGGATCGTCAGTTAGGGTTCGTGTTTAAGACTTCGACCTTTGTGTCCAAGTGTATGACGATTTGGTGCTGCTTATGCTTTACCGTTGGAGAAGAAGACAAGAAGGAAGAGGAACTGAAGATTGGTGAAATGAAACCCATGTGTGAGGATGTTTTTGACAACCCGGATGACTCTGATCGCATTGTCCGAAATGGGGATGATTCTCAAGGGACTGACCCGCTTGCGATTGCTGTTGATGGGCCTGACCGCCACGATGCTGATCGACTGATATTGTTTGAGGATATGGACAGAGCAATGCACGATGACGGCGATGATGGTGCTCATTGGGATGATGACGTCGGCGGCGGCGGTGGGGCTATCAATCCTCGGAATTTTTCTTTTGGAATTCTGCATCAATCTGAGGGTGGGGAGAGTAGTAGAGCCTCGGCTTTGGCTTTGTCTTCTACAGTGGAGACTTCTATTGAGGATCGCGATCGCGATGTCCACCATAAGCGCGCTAAAGTTCTCTCCAAATTCAATGAGTACTCCTTTGCAACTCCATGGCTATTGGGTGCTGGAAATCTTACAAGAGATCACGATTTTAGTTCTGGATCATCTTCAATTATGTCTAGGAGTGATTTTTTTTGTCATGGTTCTTCATCAAACAGAGTTAACAACGACGGAGATTTTGAATCAAGTTTTGGCAATGATGATGAGATAAATGAGAATGGGGCCTCTAAATTAGAGGGATCTGAAGTAAGAATAGATCTTACGGATGATTTACTGCATATGGTTTTCTCTTTCTTGGATCACATCAATCTTTGTCGAGCTGCTATAGTCTGCAGGCAGTGGCGAGCTGCTAGTGCTCATGAAGATTTCTGGAGGTGTTTGAATTTTGAAAATAGGAACATATCCATGGAACAGTTTGAGGATATGTGTGGGCGGTATCCTAATGCGACAGAGGTGAATATCTCTGGTGTACCTGCTGTTCACTTGCTTGCAATGAAAGCAGTTTTTTCTTTAAGAAATCTGGAGGTTTTAACTCTGGGGAGAGGACAACTGGGAGATACATTTTTCCATGCCCTGGCTGATTGCCATTTGTTGAAGAGCTTGACTGTCAACGATTCTACGCTAGTTAATGTTACACAAGAGATACCTATAAGCCACGATAGACTGCGTCATCTTCATCTTACTAAATGTCGTGTTATACGTATATCTGTCAGATGTCCACAACTTGAAACATTGTCTTTGAAGCGCAGCAACATGGCACATGCTGGTCTTAGTTGCCCTCTTCTTCGTGACCTGGATATAGGCTCTTGCCACAAGCTCTCAGATGCTGCGATTCGCTCAGCAGCTATTTCGTGCCCACAATTGGAATCTCTTGATATGTCTAATTGTTCATGTGTTAGTGACGAGACATTACGTGAAATTGCTATGACCTGCCCGAATCTCCAGCTTCTGAATGCATCATACTGCCCAAATATATCTTTGGAGTCTGTAAGATTGACAATGCTGACTGTGCTTAAGCTTCATAGCTGTGAGGGCATCACATCAGCTTCAATGACCGCAATATCTAGTTGTTCTAGGTTGAAGGTTTTGGAGCTTGATAATTGCAGTCTGTTGACTTCTGTGTCACTGGATCTTCCTCGTTTACAGAATATCAGACTTGTCCATTGCCGCAAATTCTCTGATTTGAGTTTACAGAGTGTTAAATTATCATCCATTATGGTCTCTAATTGTCCTTCTCTTCACCGGATCAACATCACTTCCAATTTACTTCAAAAATTAGTGTTGAAGAAACAAGAGAGCTTGGCCAAATTGGTTTTGCAGTGCCCTAGTCTACAAGATGTGGACCTCACAGATTGTGAATCTCTAACAAATTCTATTTGTGAAGTCTTTAGTGACGATGGTGGATGCCCGACATTGAAATCACTTGTTCTAGATAACTGCGAGAGTTTGACAGCCGTTCAATTCTGTAGCAGTTCTTTAGAAAGTCTTTCCCTTGTCGGTTGTCGGGCAGTCACTTCACTTGAACTTCAATGTCCTAATCTTGAACAAGTATCTCTAGATGGCTGTGATCATCTTGAAAGGGCATCATTTTCCCCTGTTGGTCTGCGATCACTAAACCTGGGAATTTGTCCCAAATTGAATGAATTAAGACTTGAGGCCCCTCGTATGGATTTACTTGAGTTGAAAGGCTGTGGTGGATTGTCTGAAGCAGCCATCAATTGCCCTCGTCTAACATCATTGGATGCTTCGTTTTGTTGCCTACTGAAAGATGAGTGCTTGTCTGCAACAACTGCCTCGTGTCCACAGATTGAGTCGTTAATTCTGATGTCATGTTCTTCGGTTGGTTCAATGGGACTTTACTCTCTGCAATGTCTTCCGAAGTTGGTTGTGCTTGATTTATCATATACATTTTTGACGAGCTTGCAGCCAGTTTTTGAGTCTTGTGCTCAACTGAAGGTATTGAAACTACAAGCATGCAAGTATTTAACTGACTCATCGCTAGAACCTCTCTACAAGGAAGGTGCTCTTCCAGCTCTTCAGGAGTTAGATTTGTCTTATGCGATACTTTGTCAGTCTGCCATAGAAGAGCTTCTTGCTTGTTGCACACAGTTAACTCATGTGAGCTTAAATGGGTGTGTGAACATGCATGATCTAAATTGGGATTGTAGCATTAGGCAGCTTTCGTCGTCCGGCACCCCCCTTCCTCTTGGTCCGGCCACCATTGATGATATTGAGAAACCAGTTGCACAGCCAAACCGTTTGTTACAGAATCTTAATTGTGTAGGTTGTCAAAATATTAGGAAGGTTCTCATTCCTCCAGCCGCACGTTGTTTTCATTTATCATCGTTGAACCTATCTCTGTCTGCAAATCTCAAGGAAGTTGACGTTTCTTGTTACAACCTATGCTTTCTTAACTTGAGTAATTGTTGCTCTCTGGAGGTTTTGAGACTCGACTGCCCGAGGCTGACCAGCCTCTTTCTCCTGTCCTGCAACATTGAGGAAGAAGCAGTCGAAGCTGCAATATCAAAATGTAGCATGCTCGAGACGTTAGATGTCCGCTCTTGTCTGAAGATCTCGCCAATTAGCATGGTACAACTGCGTATCGCTTGCCCGAGTTTGAAGCGGATCTTCAGCAGTCTGTCTCCAACATGA 4950 45.62 MMIACLDRFVTDTDSRRPHDGSSLCKALELQLQGGITTDSRDIGLAGKDFGGLHSITPLALVKPTGADDVAKVVKSAVQSSNLTVAARGNGHSINGQAMADRGLVVDMTAMENHFHVVLNNGLSYVDVSGGAIWEDVLKRCVSDYGLAPRSWTDYLSLTVGGTLSNAGVSGQAFRYGPQISNVAELEVVTGTGDTLICSEMENSELFFSVLGGLGQFGIITKARVLLQPAPDMVRWIRLVYAEFESFTRDAESLVRRPEGDSFDYVEGFVFSNNDDPLTGRSTVPLDSDAAFDKAHLPETAGSVLYCLEVAVHYRNNDQGAIVDTEVHRLLTGLGYIKPLRFQVDVSYIQFLSRVKRAEEEAIANGVWDTPHPWLNLFVSKSDISDFDRVVFKSLLQNGVGGPMLVYPLLRSRWDSRMSVVLPEGEIFYLVALLRFTPPNPKPTMVDKLVEQNREIIRRCKENDIDFKLYLPHYHSRDEWKLHFGNQWSRFVERKALFDPMAILAPVGISGIFTSPLAAAHTTISGPIRSIQIFSSLCFQFLFPISLSFLILILISPLFVFASLILRPIRAVVFCCWVGFRFNLPLLGFHCLWAGIVLGGGNAWDRQLGFVFKTSTFVSKCMTIWCCLCFTVGEEDKKEEELKIGEMKPMCEDVFDNPDDSDRIVRNGDDSQGTDPLAIAVDGPDRHDADRLILFEDMDRAMHDDGDDGAHWDDDVGGGGGAINPRNFSFGILHQSEGGESSRASALALSSTVETSIEDRDRDVHHKRAKVLSKFNEYSFATPWLLGAGNLTRDHDFSSGSSSIMSRSDFFCHGSSSNRVNNDGDFESSFGNDDEINENGASKLEGSEVRIDLTDDLLHMVFSFLDHINLCRAAIVCRQWRAASAHEDFWRCLNFENRNISMEQFEDMCGRYPNATEVNISGVPAVHLLAMKAVFSLRNLEVLTLGRGQLGDTFFHALADCHLLKSLTVNDSTLVNVTQEIPISHDRLRHLHLTKCRVIRISVRCPQLETLSLKRSNMAHAGLSCPLLRDLDIGSCHKLSDAAIRSAAISCPQLESLDMSNCSCVSDETLREIAMTCPNLQLLNASYCPNISLESVRLTMLTVLKLHSCEGITSASMTAISSCSRLKVLELDNCSLLTSVSLDLPRLQNIRLVHCRKFSDLSLQSVKLSSIMVSNCPSLHRINITSNLLQKLVLKKQESLAKLVLQCPSLQDVDLTDCESLTNSICEVFSDDGGCPTLKSLVLDNCESLTAVQFCSSSLESLSLVGCRAVTSLELQCPNLEQVSLDGCDHLERASFSPVGLRSLNLGICPKLNELRLEAPRMDLLELKGCGGLSEAAINCPRLTSLDASFCCLLKDECLSATTASCPQIESLILMSCSSVGSMGLYSLQCLPKLVVLDLSYTFLTSLQPVFESCAQLKVLKLQACKYLTDSSLEPLYKEGALPALQELDLSYAILCQSAIEELLACCTQLTHVSLNGCVNMHDLNWDCSIRQLSSSGTPLPLGPATIDDIEKPVAQPNRLLQNLNCVGCQNIRKVLIPPAARCFHLSSLNLSLSANLKEVDVSCYNLCFLNLSNCCSLEVLRLDCPRLTSLFLLSCNIEEEAVEAAISKCSMLETLDVRSCLKISPISMVQLRIACPSLKRIFSSLSPT 1649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11591206 11606912 - CmaCh01G017020.1 Cma01g01702 287395

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01702 1649 SMART LRR_CC_2 1235 1265 IPR006553 -
Cma01g01702 1649 SMART LRR_CC_2 1025 1050 IPR006553 -
Cma01g01702 1649 SMART LRR_CC_2 1051 1076 IPR006553 -
Cma01g01702 1649 SMART LRR_CC_2 1414 1439 IPR006553 -
Cma01g01702 1649 SMART LRR_CC_2 1144 1169 IPR006553 -
Cma01g01702 1649 SMART LRR_CC_2 1467 1496 IPR006553 -
Cma01g01702 1649 SMART LRR_CC_2 1098 1123 IPR006553 -
Cma01g01702 1649 SMART LRR_CC_2 1077 1097 IPR006553 -
Cma01g01702 1649 SMART LRR_CC_2 1610 1635 IPR006553 -
Cma01g01702 1649 SMART LRR_CC_2 1277 1307 IPR006553 -
Cma01g01702 1649 SMART LRR_CC_2 1366 1391 IPR006553 -
Cma01g01702 1649 SMART LRR_CC_2 1585 1609 IPR006553 -
Cma01g01702 1649 SMART LRR_CC_2 1340 1365 IPR006553 -
Cma01g01702 1649 SMART LRR_CC_2 1207 1231 IPR006553 -
Cma01g01702 1649 Gene3D - 234 470 IPR016170 -
Cma01g01702 1649 ProSiteProfiles F-box domain profile. 847 893 IPR001810 GO:0005515
Cma01g01702 1649 SUPERFAMILY F-box domain 852 906 IPR036047 GO:0005515
Cma01g01702 1649 Gene3D - 108 232 IPR016169 -
Cma01g01702 1649 SUPERFAMILY RNI-like 1201 1432 - -
Cma01g01702 1649 PANTHER OS10G0396666 PROTEIN 755 1610 IPR044703 GO:0010252|GO:1905393
Cma01g01702 1649 SUPERFAMILY L domain-like 936 1294 - -
Cma01g01702 1649 SUPERFAMILY FAD-linked oxidases, C-terminal domain 231 506 IPR016164 GO:0003824|GO:0050660
Cma01g01702 1649 Gene3D Ribonuclease Inhibitor 848 1097 IPR032675 -
Cma01g01702 1649 Gene3D Ribonuclease Inhibitor 1098 1252 IPR032675 -
Cma01g01702 1649 Gene3D Ribonuclease Inhibitor 1253 1406 IPR032675 -
Cma01g01702 1649 SUPERFAMILY FAD-binding/transporter-associated domain-like 33 229 IPR036318 GO:0050660
Cma01g01702 1649 SMART fbox_2 853 893 IPR001810 GO:0005515
Cma01g01702 1649 Gene3D Ribonuclease Inhibitor 1407 1648 IPR032675 -
Cma01g01702 1649 ProSiteProfiles PCMH-type FAD-binding domain profile. 54 230 IPR016166 GO:0071949
Cma01g01702 1649 Pfam F-box-like 855 894 IPR001810 GO:0005515
Cma01g01702 1649 Gene3D - 46 506 IPR016167 -
Cma01g01702 1649 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 231 506 IPR015345 GO:0009690|GO:0019139|GO:0050660
Cma01g01702 1649 Pfam FAD binding domain 58 198 IPR006094 GO:0050660
Cma01g01702 1649 SUPERFAMILY L domain-like 1334 1643 - -
Cma01g01702 1649 PANTHER OS10G0396666 PROTEIN 755 1610 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01702 - - - cmo:103493700 1707.96
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01702 Cma09g00363 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01702 Cma-Chr1:11591206 Cma04g00275 Cma-Chr4:1353662 1.39E-143 dispersed
Cma07g01353 Cma-Chr7:7700381 Cma01g01702 Cma-Chr1:11591206 6.44E-06 transposed
Cma09g00364 Cma-Chr9:1502454 Cma01g01702 Cma-Chr1:11591206 9.49E-13 transposed
Cma01g01702 Cma-Chr1:11591206 Cma10g00761 Cma-Chr10:3490111 1.10E-06 wgd
Cma01g01702 Cma-Chr1:11591206 Cma09g00363 Cma-Chr9:1496454 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g160 Blo01g01447 Blo12g01030 Bda01g00639 Bda03g00126 Bpe02g01249 Bpe02g00507 Bma04g00113 Bma01g02195 . . Cma01g01702 . Car09g00311 . . . Cpe06g00257 . . . . . . . Cla05g01625 Cam05g1735 Cec05g1743 Cco05g1800 Clacu05g1725 Cmu05g1609 Cre05g1738 Cone4ag1698 Cone7ag1614 Cone17ag0943 Cone20ag0286 Lsi04g01389 . . . . . Bda01g01004 . . Bpe04g00111 . . Sed05g1792 Cmo01g01809 Cmo09g00362 Cma09g00363 . Car01g01320 . . Cpe02g00289 Bhi09g03084 Tan01g3470 Cmetu07g2288 . Hepe01g1915 Mch11g0450 . . . . . . . . . . . Cme07g00178
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004724 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 4 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01702 Cma_Chr01 FPKM 9.675141 11.06637 9.597625 8.963192 14.890046 16.19846 15.604772 7.5186 7.039725 8.263347