Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01703 ATGCCGGAAATAGACGAATGGGAATTGGCCAGCATTCGTTTGGTGGAAAAACATCCTCTTATCTCTCAGGCGAAGCAACAACACCAAACCGTCACCGGAAGAGCGATAAGAACCAGTATCGTCATGGCGGCGGCAGCAGCAGTACCGTCCACTACTTCCACCACCGTCGTCCACATTCGCCGAAGCAACTTTCTCTGTCCGACCTCAAAAACCACCGCTATATTCTTCAACTACATCACTTCACTCCCAAAGCCGCTCAAATTCAGCATTAGAAACTCCAACGACTCATCAGCGGAGACTGTCACAACGGACACGGCGAGTGAGCCGGAACCTGAAAGCTCACTCAAGGCCTCCGATGGATCGTCGTCTCTGATTTCGGCTCTCAACGTCGAACGAGCCCTCCGTGGAATTCCAATTACAGACGTGAATCACTACGGAAGACTCGGACTCCGAAGAGGATGTCCATATGATCAGGTTCCGATTGCGTACAACATCAAAGTTGAAGAACTAAAGAGCCAGGGATTAGAGGAAGAAGAACTCAACCAAAAACTCGAACTCCTAAAAGAATCTTACACGATATTGTCATCTGTTGAAGAGAGAAGAATGTACGATTGGAGCTTGTCCAGAATCGGAGAACCAGAAAAATATACGTGGCCGTTCGAGGCCGATATAACTCAGATTCAAACTCAATTGCCGCCGCCGAAGGAACCGGAAGACGAAGGACCGACGAGATTGGTGGGTTACTTCTTCTTAGGGTGGTTCGTTCTGTCCGTCGTGTTATCTATTGCTCTGAATTTGTAG 801 48.56 MPEIDEWELASIRLVEKHPLISQAKQQHQTVTGRAIRTSIVMAAAAAVPSTTSTTVVHIRRSNFLCPTSKTTAIFFNYITSLPKPLKFSIRNSNDSSAETVTTDTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEADITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALNL 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11612451 11614387 - CmaCh01G017030.1 Cma01g01703 287396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01703 266 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT U, CHLOROPLASTIC 42 266 IPR044199 GO:0009535|GO:0010598
Cma01g01703 266 MobiDBLite consensus disorder prediction 94 119 - -
Cma01g01703 266 Coils Coil 167 190 - -
Cma01g01703 266 SUPERFAMILY Chaperone J-domain 142 208 IPR036869 -
Cma01g01703 266 Gene3D DnaJ domain 139 214 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01703 K23052 ndhU; NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [EC:7.1.1.-] - csv:101217656 355.14
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g149 . Blo12g01028 . . . . . . . . Cma01g01703 . . . . . . . . . . . . . Cla05g01624 Cam05g1734 Cec05g1742 Cco05g1799 Clacu05g1724 Cmu05g1608 Cre05g1737 . Cone7ag1612 . . Lsi04g01390 . . . . . . . . Bpe04g00113 . . Sed13g1903 Cmo01g01808 . . . Car01g01321 . . Cpe02g00288 Bhi09g03085 Tan01g3468 Cmetu07g0846 . Hepe01g1914 Mch11g0448 . . . . . . . . . . . Cme07g00179
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013610 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01703 Cma_Chr01 FPKM 0.882267 0.0 5.227604 5.070174 41.287312 36.331661 40.278412 2.597051 2.934124 3.394531