Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01705 ATGGATTTGAACGGGAATACACCTTTGAAACCTATTCGAAGAAGCTCGTCGCAGAAGGAAAGTGAAAATGGTAGCCAAGTAGTTGTTGAAATTAGCAGAGATGAAAATGGGCACTCTGTTCCGAAGCAAAACAGAGTCGATTCACAGACCAAAGAGCCGATGGATTCAAGTATTGGCTATGGCTACGACTCGCATCTCACTCCGACGGCGAATAAACCCCCGAAAATCCCCGGTTCAGTTGGAACCCTCACGCCTAGAAAATCCCTCAAAAGATCAATCCTATCGAAACCCAAATCCAGATTCGGGGAACAATCAAGCGTCATCGATTCAGATACGTTTGAGGAGAATCGTTTGTCGTTTAGAGATCAAATCAGTGCAAATTCATCGAGACGTTCTACTCTCAACATGCCGAAGGAACATCACGAGGAAGGAGATGACGAGTTTTTCAAGATAGAGAAGTTTAAGAAAGTGAAGCACAAGAAAGTGAAGGCAATAACATTGATTAAATGGGTTGGAGCTTTTTGCATCATTGGTTGCTTGGTAGCTAGCTTGACTATTAAACGTTTGAAGAATTACTTCCTTTGGGGTATAGAGATTTGGAAATGGTGTTTGCTTGCTACTGTGATTTTGTGTGGAATGATATTTACTCATCGGGTTATGAACGTGATTGTGTTCTTGATTGAGAGGAACTTTTTGCTTCAGAAAAAAGTGTTTTATTTTGTTCATGGGTTGAAGAAGAGTGTCCAAGTGACCCTTTGGTTGACATTGGTTCTTGTTACATGGGTGTCTTTGTTTGACCGGAGTAGCCATAGGGTCTTGAGATCAAAGATCAGTGGGAAGATTTTGGATGCCATTACATGGACTCTAATAACACTTCTGATAGGAGCATTTTTGTGGTTGATAAAGACATTGTTGTTGAAAATACTGGCCTCCAAGTTCCATATGAACCGATTTTTCGACAGAATTCAGGAATCCATTTTCCATCATCATGTTCTTCAAACCCTCTTGAACCCTTCACCAATTGGCATGCCTGAAAGTACTGTCGAGTCCAACAGTGGTCGATTGAGTTTCAAGGGTAAAAAATCCGACCATAAGAAGGTGATTGACTTGGGAAAGATTCATCAGCTGAAGCGAGAGAAGGTTTCGGCATGGACGATGAAGGTTTTGGTCGATGCAGTTGCAAGTTCGGAGATGTCGATCTCACAACTACTTGACGAAAGCTACCAAGTTGCTGACGGTGAGATCGCCGATGAGATGGAGGTTGCTGGATATGCTGCCTACAAGATCTTCGACAATATTGCCGTTCCTGGAAACGATTTCATAGAGGAAGAGGATCTTCGGAGAGTTATGATCAAAGAAGAAGTTGATCTTGTGCTTCCACTCTTTGAGGTAGATGAGACAAGGAGGATTGACTGGAAATCTCTAACAAATTGGGTGTTAAAGGTATATAAAGAGAGGAAAACACTAGCACATGCCTTGAAAGACACTAAAACAGCTGTGAAGCAATTGAACAATTTGGTAACAGCGCTTCTGATAATAGTAACAGCTATTATTTGGCTTCTGTTGATGGAAATTGCTACAACCAAAGTACTTGTCTTCCTCCTATCTCAACTTGCAGTGGCTGTTTTCATGTTTGGAAACACTTGCAAGACTATCTTTGAAGCTCTAGTCTTTGTGTTTGTTATGCATCCATTTGATGTCGGGGACCGTTGCGCTGTCGAGGGCGTCCCGTTGATGGTTGAAGAAATGAATATCTTGACAACAGTCTTCTTGAAACTCAACAATGAGAAAGTGTATTATCCCAACTCAGTTTTGGCAACAAAGTCAATCACGAATTACTACAGAAGTCCAGACATGAGCGACACGGTAGAATTCTCGATCGGTTTCGCAACGCCATTGGAGAGGATCGGGCTCATGAAAGACAGAATAAAGAGGTATTTGGAGAAGAATCCACAACACTGGCATCCAAATCATAGTGTCGTGGTGAAGGAGATCGAAGACGTGAACAAGATAAAGTTTGCTCTTTATTCGAACCACACGATGAATTTCCAGGATTGGACGGAGAAGAATCGTCGAAGAACCGAGCTGGTGATGGAGTTGAAGAGAATTTTCGAAGAACTGAAGATCAACTACAATCTTCTACCTCAAACAGTTCATCTCTTCCCAACTGAGGAGCACCGATGA 2184 42.08 MDLNGNTPLKPIRRSSSQKESENGSQVVVEISRDENGHSVPKQNRVDSQTKEPMDSSIGYGYDSHLTPTANKPPKIPGSVGTLTPRKSLKRSILSKPKSRFGEQSSVIDSDTFEENRLSFRDQISANSSRRSTLNMPKEHHEEGDDEFFKIEKFKKVKHKKVKAITLIKWVGAFCIIGCLVASLTIKRLKNYFLWGIEIWKWCLLATVILCGMIFTHRVMNVIVFLIERNFLLQKKVFYFVHGLKKSVQVTLWLTLVLVTWVSLFDRSSHRVLRSKISGKILDAITWTLITLLIGAFLWLIKTLLLKILASKFHMNRFFDRIQESIFHHHVLQTLLNPSPIGMPESTVESNSGRLSFKGKKSDHKKVIDLGKIHQLKREKVSAWTMKVLVDAVASSEMSISQLLDESYQVADGEIADEMEVAGYAAYKIFDNIAVPGNDFIEEEDLRRVMIKEEVDLVLPLFEVDETRRIDWKSLTNWVLKVYKERKTLAHALKDTKTAVKQLNNLVTALLIIVTAIIWLLLMEIATTKVLVFLLSQLAVAVFMFGNTCKTIFEALVFVFVMHPFDVGDRCAVEGVPLMVEEMNILTTVFLKLNNEKVYYPNSVLATKSITNYYRSPDMSDTVEFSIGFATPLERIGLMKDRIKRYLEKNPQHWHPNHSVVVKEIEDVNKIKFALYSNHTMNFQDWTEKNRRRTELVMELKRIFEELKINYNLLPQTVHLFPTEEHR 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11619565 11623127 - CmaCh01G017050.1 Cma01g01705 287398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01705 727 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 22 720 IPR016688 -
Cma01g01705 727 MobiDBLite consensus disorder prediction 1 84 - -
Cma01g01705 727 Gene3D - 564 613 IPR023408 -
Cma01g01705 727 MobiDBLite consensus disorder prediction 1 32 - -
Cma01g01705 727 PIRSF Memb_At2g17000 6 726 IPR016688 -
Cma01g01705 727 SUPERFAMILY Sm-like ribonucleoproteins 554 613 IPR010920 -
Cma01g01705 727 Pfam Mechanosensitive ion channel 505 710 IPR006685 GO:0016020|GO:0055085
Cma01g01705 727 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 22 720 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01705 Cma-Chr1:11619565 Cma17g00069 Cma-Chr17:327028 9.66E-164 dispersed
Cma01g01705 Cma-Chr1:11619565 Cma10g00752 Cma-Chr10:3429798 0 wgd
Cma01g01705 Cma-Chr1:11619565 Cma11g00720 Cma-Chr11:3511256 1.13E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01705 K22048 - csv:101217197 1039.64