Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01709 ATGAAATCTGCCATTTCTTCGTTGATTAGCTCCAGAAATTTCAATCTTCACCGATCTTCCCTCTCCTTCTCCATCTTCCGGCGGCCATCTCTGCTTCTACCATCTCAATTTCCGGTCATATCTACTGACGATAAGGCCACCGGCGCCAATTTTACCAGTCTGCGCCGCAAGTGTCGTTTCCATTCCAACAAGTCCTCGCCGATTATGGCCTCATCCTTCAATCCCGAACAAGCTAGGTCTCCACCTGCACTTCCGTTGCCAATCCCTCCGGTCACCAAGTTTAAAATCGGCCTATGCCAATTGATGGTGACGCCTGATAAGCAAAGGAACATTGAACATGCTCGTAAGGCCATTGAGGAGGCTGTGGAAAAAGGCGCCCAGCTTGTTGTCTTGCCGGAAATTTGGAATGGTCCTTATTCAAATGATAGCTTCCCAGTTTATGCGGAGGATATTGAAGCCGGTGGTGATGCCTCTCCTTCAACAGCCATGTTATCTGAAGTTTCTCGTCGACTAAAGGTCACTATAGTTGGTGGCTCAATAGCAGAGCGCTCAGGGGATAAATTGTATAATGCTTGTTGTATTTTTGGTACTGATGGAAAGCTGAAAGCCAAACACAGGAAGATACATCTTTTTGATATTGATATCCCTGGAAAGATCACTTTTATCGAGTCCAAGACTCTTACAGCAGGTCAAACCCCTACTGTTGTGGACACAGAAGTTGGACGTATTGGTATCGGAATCTGTTATGACATTCGTTTTCAGGAACTAGCCATGATATATGCTGCAAGAGGTGCTCACTTGATTTGCTATCCTGGGGCATTTAACATGACTACTGGACCATTGCACTGGGAGTTATTGCAGCGTGCAAGGGCTGCAGATAATCAGTTGTATTTGGCAACATGTTCACCTGCTCGAGACGATGGAGCTGGTTATGTAGCTTGGGGCCACTCTACCCTTGTTGGACCGTTTGGTGAAGTGTTAGCTACAACAGAACATGATGAAGCAATAATCATAGCGGAGATTGATTATTCACTTATTGAGCTTAGAAGGACTAACCTACCATTGCTGAAGCAAAAGCGTGGAGATCTTTACCAGTTGGTGGATGTTGAGAGGCTGAAATCCGAATGA 1128 45.66 MKSAISSLISSRNFNLHRSSLSFSIFRRPSLLLPSQFPVISTDDKATGANFTSLRRKCRFHSNKSSPIMASSFNPEQARSPPALPLPIPPVTKFKIGLCQLMVTPDKQRNIEHARKAIEEAVEKGAQLVVLPEIWNGPYSNDSFPVYAEDIEAGGDASPSTAMLSEVSRRLKVTIVGGSIAERSGDKLYNACCIFGTDGKLKAKHRKIHLFDIDIPGKITFIESKTLTAGQTPTVVDTEVGRIGIGICYDIRFQELAMIYAARGAHLICYPGAFNMTTGPLHWELLQRARAADNQLYLATCSPARDDGAGYVAWGHSTLVGPFGEVLATTEHDEAIIIAEIDYSLIELRRTNLPLLKQKRGDLYQLVDVERLKSE 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11635605 11639773 - CmaCh01G017090.1 Cma01g01709 287402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01709 375 Gene3D - 91 369 IPR036526 -
Cma01g01709 375 SUPERFAMILY Carbon-nitrogen hydrolase 87 358 IPR036526 -
Cma01g01709 375 Pfam Carbon-nitrogen hydrolase 96 347 IPR003010 GO:0006807
Cma01g01709 375 PANTHER NITRILASE-RELATED 52 374 - -
Cma01g01709 375 PANTHER OMEGA-AMIDASE, CHLOROPLASTIC-LIKE 52 374 - -
Cma01g01709 375 ProSiteProfiles Carbon-nitrogen hydrolase domain profile. 94 343 IPR003010 GO:0006807
Cma01g01709 375 CDD nit 95 360 IPR045254 GO:0016811
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01709 K13566 NIT2, yafV; omega-amidase [EC:3.5.1.3] - csv:101213917 627.091
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01709 Cma09g00358 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01709 Cma-Chr1:11635605 Cma04g01229 Cma-Chr4:6270684 1.92E-40 dispersed
Cma01g01709 Cma-Chr1:11635605 Cma09g00358 Cma-Chr9:1472481 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g141 . . . . Bpe02g01554 . . . . . Cma01g01709 . Car09g00306 . . . Cpe06g00254 . . . . . . . Cla05g01615 Cam05g1728 Cec05g1731 Cco05g1789 Clacu05g1717 Cmu05g1601 Cre05g1725 Cone4ag1690 Cone7ag1609 . Cone20ag0282 Lsi04g01397 . . . Blo17g00275 Blo18g00264 Bda01g01342 Bda13g01588 Bpe14g00277 . . Bma02g00546 Sed06g0788 Cmo01g01803 Cmo09g00357 Cma09g00358 . Car01g01327 . . Cpe02g00284 Bhi09g03094 Tan01g3460 Cmetu01g2122 . Hepe01g1910 Mch11g0442 . . . . . . . . . . . Cme07g00191
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004723 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 4 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01709 Cma_Chr01 FPKM 22.861025 23.670378 40.189377 39.31995 37.057472 37.424305 35.72393 33.483147 33.183353 33.754002