Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01712 ATGAGCCTGAATGCAGCGGAGGATGAATCGACTTCAGAAATTCATATTCCAGCAGAGATTGATTGGGATATGTTAGACAAATCCAAATTCTTTTTTCTGGGTGCTGCTTTATTTTCAGGTGTATCAACTGCTCTTTACCCTATTGTTGTTCTGAAAACTCGGCTTCAGGTTTCTGCTACTAAGCTATCAAGCTTTAACATGTCATATTCTATCATGCGCCATGAAGGTTTAAGAGGATTTTACAGAGGGTTTGGAACCTCTTTAATGGGAACTATCCCAGCTCGAGCCTTTTACATGACAGCTCTTGAAGTTACCAAGAGTGGCGTTGGTAGTGCAACGGTTAGATTAGGTTTTTCAGACACTACAGCCATGGCTATAGCTAATGGAGCTGCTGGGTTGAGCTCGGCTATGGCTGCTCAATTGGTCTGGACTCCTATAGATGTTGTGAGCCAAAGACTAATGGTTCAGGGCTGCAATAACAGTGTTAAAAACCTTAATTCTTGCGTCTATAAGAATGGTATTGACGCTTTTCGAAAGATCGTTTATGCGGATGGTTTTCGAGGATTATATAGAGGATTTGGGATATCAATCTTGACATATGCTCCATCAAATGCTGTTTGGTGGGCTTCTTACTCTGTCGCTCACAGGCTTATTTGGAGTGGTTTAGGCTACTACAATAGTAACAACGATGAGAGTTTTAATACTGCTGGGTATGCCTTCAAACCAGATTCTAAGGCAACAGTGGCTATTCAGGGCTTGAGTGCAGCCTTGGCCAGTGGGGTTTCTGCCATCATAACAATGCCTCTAGATACCATCAAGACTAGATTGCAAGTTTTGGATGGAGAAGAAAATGGTCAAAGACGACCTCTAACGGCATTGCAGACCGTAAGAAACTTGATGAAGGAAGGTGGGTTGAATGCCTGTTACAGAGGGCTCGGGCCGAGGTGGGCATCGATGGCTATGTCAGCCACCACCATGATCACGACCTATGAGTTTCTCAAACGGCTATCTGCTAAGAACCAAGATTGCTTGAGCTGA 1038 43.74 MSLNAAEDESTSEIHIPAEIDWDMLDKSKFFFLGAALFSGVSTALYPIVVLKTRLQVSATKLSSFNMSYSIMRHEGLRGFYRGFGTSLMGTIPARAFYMTALEVTKSGVGSATVRLGFSDTTAMAIANGAAGLSSAMAAQLVWTPIDVVSQRLMVQGCNNSVKNLNSCVYKNGIDAFRKIVYADGFRGLYRGFGISILTYAPSNAVWWASYSVAHRLIWSGLGYYNSNNDESFNTAGYAFKPDSKATVAIQGLSAALASGVSAIITMPLDTIKTRLQVLDGEENGQRRPLTALQTVRNLMKEGGLNACYRGLGPRWASMAMSATTMITTYEFLKRLSAKNQDCLS 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11645103 11646140 - CmaCh01G017120.1 Cma01g01712 287405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01712 345 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Cma01g01712 345 Gene3D Mitochondrial carrier domain 28 343 IPR023395 -
Cma01g01712 345 SUPERFAMILY Mitochondrial carrier 23 333 IPR023395 -
Cma01g01712 345 PRINTS Mitochondrial carrier protein signature 40 58 IPR002067 GO:0055085
Cma01g01712 345 PRINTS Mitochondrial carrier protein signature 81 99 IPR002067 GO:0055085
Cma01g01712 345 PRINTS Mitochondrial carrier protein signature 132 154 IPR002067 GO:0055085
Cma01g01712 345 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 217 IPR018108 -
Cma01g01712 345 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 1 343 - -
Cma01g01712 345 ProSiteProfiles Solute carrier (Solcar) repeat profile. 246 336 IPR018108 -
Cma01g01712 345 Pfam Mitochondrial carrier protein 247 340 IPR018108 -
Cma01g01712 345 Pfam Mitochondrial carrier protein 36 107 IPR018108 -
Cma01g01712 345 Pfam Mitochondrial carrier protein 126 218 IPR018108 -
Cma01g01712 345 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 343 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01712 Cma09g00357 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01712 Cma-Chr1:11645103 Cma17g00701 Cma-Chr17:5800205 1.92E-162 dispersed
Cma01g01712 Cma-Chr1:11645103 Cma09g00357 Cma-Chr9:1469887 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01712 K15121 - csv:101213436 604.749