Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01713 ATGGAGTTAGCCAGAATGGGGTTGGACCCAATATTCCTGAATGCCCTCCATGACCTTCTGGACTTCACCGATGAGCCAGGGCAGAGCACCCACCACGGGCCGTCACGCGCCTACGTGAGGGACGCAAAGGCGATGGCGGCGACACCAGCCGATGTGGTAGAATATCCAAACGCCTACCAATTCTCCATCGACATGCCTGGCCTCAAAATGGACCAAATCAAGGTCCAAATCGAGGACAACCAGTTGGTTGTGACCGGCGAAAGGAAGAGAGAAAGTGAAAAGGCTAAGGAAGGGAAATACGTGACAATGGAGAGGAGGCTGGGCAAATACTTGAAGAAATTTGTGCTGCCGGAGGCCGCCGACGTTGACAAAGTATCGGCGGCGTACCAGGACGGAGTGCTGTCGGTCACGGTGGAGAAGAAGCCGCCGCCAGAGCCCAAAAAGGCCAAGACTATTGAGGTTCGTGTGGGACAAGATTGA 480 54.79 MELARMGLDPIFLNALHDLLDFTDEPGQSTHHGPSRAYVRDAKAMAATPADVVEYPNAYQFSIDMPGLKMDQIKVQIEDNQLVVTGERKRESEKAKEGKYVTMERRLGKYLKKFVLPEAADVDKVSAAYQDGVLSVTVEKKPPPEPKKAKTIEVRVGQD 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11647579 11648058 + CmaCh01G017130.1 Cma01g01713 287406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01713 159 MobiDBLite consensus disorder prediction 139 159 - -
Cma01g01713 159 Gene3D - 11 155 IPR008978 -
Cma01g01713 159 CDD ACD_sHsps-like 51 138 - -
Cma01g01713 159 MobiDBLite consensus disorder prediction 141 159 - -
Cma01g01713 159 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 41 155 IPR002068 -
Cma01g01713 159 SUPERFAMILY HSP20-like chaperones 33 150 IPR008978 -
Cma01g01713 159 Pfam Hsp20/alpha crystallin family 52 154 IPR002068 -
Cma01g01713 159 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 9 157 - -
Cma01g01713 159 PANTHER 18.8 KDA CLASS II HEAT SHOCK PROTEIN-LIKE 9 157 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01713 K13993 HSP20; HSP20 family protein - csv:101213192 262.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01713 Cma-Chr1:11647579 Cma04g01152 Cma-Chr4:5895345 2.45E-23 dispersed
Cma15g00997 Cma-Chr15:6038566 Cma01g01713 Cma-Chr1:11647579 7.32E-10 dispersed
Cma01g01713 Cma-Chr1:11647579 Cma01g01714 Cma-Chr1:11648309 2.55E-48 tandem
Cma01g01713 Cma-Chr1:11647579 Cma09g00355 Cma-Chr9:1467748 9.97E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g132 Blo01g01454 . . . . . . . . . Cma01g01713 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01402 . . . Blo17g00278 . . Bda13g01590 . . . . . . . . . Car01g01331 . . . . . . . . . . . . . . . . . . . . Cme07g00196
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001297 3 2 4 4 3 2 2 2 2 1 1 2 3 2 2 3 2 3 3 2 1 2 1 3 2 2 3 3 2 7 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01713 Cma_Chr01 FPKM 4.691667 4.624298 13.684413 8.100577 0.184644 0.235681 0.363574 17.846865 15.388599 10.539997