Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01714 ATGCCAGTGAGGGCATCAAACATTTCTCCCGTTAACAAGCGAAAGATGGATCTAAGAATCATGGGCTTAGACTCCCCAATCTTCTCCACCCTCCACCACGTTATGGATCTCGTCGACGAGGCCGACAAGTCGTTCAACGCCCCGACACGAACCTACGTCCGGGATGCCAATGCCATGGCAGCCACTCCGGCCGACATCAAGGAGTATCCAAATTCCTACGTTTTCGTCGTCGACATGCCAGGGCTGAAGGTTGGCGACATCAAGGTTCAGGTTGAGGACGACAATGTGCTACTGATAAGTGGCGAGAGGAAGAGGGAGGAGGAGAAAGAAGGGGCGAAGTATGTGAGGATGGAGAGGAGAGTTGGCAAGTTAATGAGGAAATTTGTGTTGCCGGAAAATGCCAACATTGATGCCATCTCGGCGGTTTGTCAGGATGGTGTGCTCACCGTGACGGTCCAAAAGTTGCCACCACCTGAGCCCAAGAAGCCCAAGGTGGTTGAGGTCAAGGTCAATTGA 516 52.52 MPVRASNISPVNKRKMDLRIMGLDSPIFSTLHHVMDLVDEADKSFNAPTRTYVRDANAMAATPADIKEYPNSYVFVVDMPGLKVGDIKVQVEDDNVLLISGERKREEEKEGAKYVRMERRVGKLMRKFVLPENANIDAISAVCQDGVLTVTVQKLPPPEPKKPKVVEVKVN 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11648309 11649229 + CmaCh01G017140.1 Cma01g01714 287407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01714 171 SUPERFAMILY HSP20-like chaperones 28 165 IPR008978 -
Cma01g01714 171 PANTHER 18.0 KDA CLASS II HEAT SHOCK PROTEIN 23 170 - -
Cma01g01714 171 Gene3D - 23 170 IPR008978 -
Cma01g01714 171 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 55 171 IPR002068 -
Cma01g01714 171 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 23 170 - -
Cma01g01714 171 Pfam Hsp20/alpha crystallin family 65 169 IPR002068 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01714 K13993 HSP20; HSP20 family protein - csv:101212955 239.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01714 Cma-Chr1:11648309 Cma09g00355 Cma-Chr9:1467748 6.25E-84 dispersed
Cma01g01713 Cma-Chr1:11647579 Cma01g01714 Cma-Chr1:11648309 2.55E-48 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g130 . . . . . . . . . . Cma01g01714 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g1780 . . . . . . . . Bhi09g03104 Tan01g4592 Cmetu07g0720 . Hepe01g1905 Mch11g0438 . . . . . . . . . . . Cme07g00197
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001297 3 2 4 4 3 2 2 2 2 1 1 2 3 2 2 3 2 3 3 2 1 2 1 3 2 2 3 3 2 7 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01714 Cma_Chr01 FPKM 18.267443 13.676073 59.555485 45.316719 58.507339 79.639511 50.485493 443.11203 491.506104 402.035217