Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01716 ATGGCGGAGCTTATTCAGGTGCCTTACGACGTCACTGTCCGTCTTGTAATGGCTTCACTCGAACGGAATTTCTTGCCGGACGCCGTCGTAAGAAGGTTCACCCGCTTGTTACTCGCCTCTCGCATTCGCTCCCAGTTCAAGCCTTCCGCTCAACTCCAACTCTCCGATTTTCTCCACTTTGTGCACGCTTTAAGGGAAATGCCAATTGCTATTAAGACTGATAAGCCAAAAGCTCAACATTACGAGCTTCCTACCTCGTTCTTCAAGTTAGTTTTGGGGAAGAATCTCAAGTACAGTTCATGCTATTTCAAGGACAAGTCAAGTACCTTGGAGGACGCAGAGGAGGCCATGCTACAAATGAGTTGTGAAAGATCACAACTGAAGGATGGCCACTCTGTTCTTGATGTTGGATGTGGCTGGGGGTCACTTTCGTTGTATATTGCCCAAAATTACAAGAATTGTCGGGTGACTGGAATTTGCAATTCAACCACACAGAAAGATTACATTGAGGAGCAGTGCCGGGATCTCCAGCTGAATAATGTCAACATTATTGTTGCAGACATCAGCACTTTTGAAATGGAAGCTAAATATGACAGAATAATTTCCATTGAAATGTTTGAGCATATGAAGAACTACAAGGATCTTCTCAAGAAAATATCAGGCTGGATGAAACAGGATAGTCTCCTCTTTGTTCATCATTTTTGCCATAAAGTCTTTGCCTATCACTTTGAGGATAAAAATGAAGATGATTGGATTACTAGATACTTCTTCGATGGTGGCACGATGCCTTCTGCAAATCTACTCCTCTATTTTCAGGACGAAGTGTCGATTGTCGATCATTGGCTTGTGAATGGCAAGCACTATTCTCAAACAAGTGAAGAGTGGCTCAAAAGAATGGACAAGAACATAGCTTCAATAAAACCAATCATGGCAACTACTTATGGCAAGGATTCAGCTGTAAAGTGGACTGTTTATTGGAGAACATTCTTCATTGCAGTAGCCGAGTTATTTGGGTACAACAATGGGGAAGAATGGATGGTTTGCCATTTACTATTCAAGAAGAAATGA 1068 42.23 MAELIQVPYDVTVRLVMASLERNFLPDAVVRRFTRLLLASRIRSQFKPSAQLQLSDFLHFVHALREMPIAIKTDKPKAQHYELPTSFFKLVLGKNLKYSSCYFKDKSSTLEDAEEAMLQMSCERSQLKDGHSVLDVGCGWGSLSLYIAQNYKNCRVTGICNSTTQKDYIEEQCRDLQLNNVNIIVADISTFEMEAKYDRIISIEMFEHMKNYKDLLKKISGWMKQDSLLFVHHFCHKVFAYHFEDKNEDDWITRYFFDGGTMPSANLLLYFQDEVSIVDHWLVNGKHYSQTSEEWLKRMDKNIASIKPIMATTYGKDSAVKWTVYWRTFFIAVAELFGYNNGEEWMVCHLLFKKK 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11653266 11656483 + CmaCh01G017160.1 Cma01g01716 287409

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01716 355 Pfam Mycolic acid cyclopropane synthetase 77 325 - -
Cma01g01716 355 PANTHER - 5 355 - -
Cma01g01716 355 CDD AdoMet_MTases 133 234 - -
Cma01g01716 355 Coils Coil 110 130 - -
Cma01g01716 355 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN 5 355 - -
Cma01g01716 355 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 79 347 IPR029063 -
Cma01g01716 355 Gene3D Vaccinia Virus protein VP39 71 349 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01716 - - - csv:101212472 656.366
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01716 Cma-Chr1:11653266 Cma17g00149 Cma-Chr17:730308 3.17E-26 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g121 . . Bda01g00631 . . Bpe02g00499 . Bma01g02205 . . Cma01g01716 . . . . . . . . . . . . . Cla05g01853 . Cec05g1989 Cco05g2047 . Cmu05g1850 Cre05g1975 Cone4ag1682 Cone7ag1599 . . Lsi04g01406 . . . . . . . . . . . . Cmo01g01795 . . . Car01g01332 . . Cpe02g00277 Bhi09g03119 . . . . . . . . . . . . . . . . Cme07g00202
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003108 1 12 0 1 1 1 1 1 2 1 2 1 1 2 1 1 2 3 1 2 1 2 1 1 1 2 1 1 3 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01716 Cma_Chr01 FPKM 8.54233 9.805869 11.396193 11.763024 130.659698 140.144638 139.421249 7.987745 8.13823 11.092434