Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g01718 | ATGGAGGATCGGGAGGAGGAAGAGAGGCCGGAAGAAGAGGTGCAAGGTTCGAGTCTGACGATGGAGAAAGTGGCGGCCGCTAAGAAGTTTATAGAGAATCATTACAGAGCTCAGATGAAGAACATTCAAGAGCGGAAGGAGAGACGATGGATGTTGGAAAGAAAGTTAGCCTCCTCGGATGTGCCTAAGGAAGAACAAATCAATCTTATCAAAGATTTAGAGCGGAAAGAAACTGAGTTTATGCGACTCAAAAGGCACAAGATTTGTGTTGATGATTTTGAGCTTTTAACCATCATTGGCAGGGGGGCTTTTGGTGAAGTTCGATTATGTCGTGAGAAGAAATCTGGTGACATATATGCCATGAAAAAATTGAAGAAATCTGAAATGCTGATGAGAGGACAGGTGGAACATGTTAGAGCAGAAAGGAATTTATTAGCAGAAGTTGCCAGCCACTGCATAGTGAAGCTTTATTACTCATTCCAGGATGCTGAGTACTTGTACTTGATCATGGAATATCTTCCAGGTGGAGATATGATGACTCTGCTTATGAGAGAGGACACATTGACTGAAAATGTGGCTAAATTTTACATTGCACAGAGTGTTCTTGCTATAGAATCTATCCACAGGCACAACTATATCCACAGGGACATTAAACCTGACAATCTTCTTCTGGACAAAAATGGTCACATGAAGCTTTCTGATTTTGGACTCTGTAAGCCACTGGATTCTTTAACCTTATCAGCACTACATGAAAATAAAGCCATGGATGATGAAAGTTTGGCAGAACCAATGGACATTGATGATAATAGGAGTAGTTGGAAGAGTCCCAGCGAACAGCTATATCACTGGCAAATGAACCGGAGGAAATTGGCATTTTCAACAGTTGGAACACCTGATTACATAGCTCCAGAAGTATTACTCAAAAAAGGATATGGGATGGAGTGCGACTGGTGGTCCCTCGGTGCAATTATGTATGAGATGCTCGTTGGCTATCCTCCATTTTACTCCGATGATCCAATCACCACCTGCAGAAAGATTGTTCACTGGAAAAATCAACTGAAGTTTCCAGAGGATGCTAAGTTGTCAATTGAAGCAAAGGATCTCATCTGTAGGTTGCTTTGCGACGTTGAGCATAGACTTGGTACTGGAGGTGCATACCAAATTAAAAGTCATCCGTGGTTCAAAGATGTCATCTGGGATAGACTTTATGAAATGGAGGCAGCATTTAAGCCTGAAGTTAATGGAGAGCTCGATACCCAGAACTTTATGAAGTTTGATGAATTGGATCCACCTATACCAGGAAAACGTGGCTCCGGACCCTCAAGGAAGATGCTATTGACTCCCAAAGATCTCAGCTTTGTTGGGTATACGTACAAGAACTTCGATGCTGTCAAAGGGCTTCATGGATCACTCGATTCTCAGAGATTGTCAATGAAACAGCCTCCAACTGATATATTAAATGGCACTGCGGGAGACTATGCAGCCGAACTAATAGCCAGTGAGGCCGAAATGCAGATGCTAGCAGTATCAGGAGACCCCATGTTGCCATAA | 1551 | 42.68 | MEDREEEERPEEEVQGSSLTMEKVAAAKKFIENHYRAQMKNIQERKERRWMLERKLASSDVPKEEQINLIKDLERKETEFMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSGDIYAMKKLKKSEMLMRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLTENVAKFYIAQSVLAIESIHRHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDSLTLSALHENKAMDDESLAEPMDIDDNRSSWKSPSEQLYHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWKNQLKFPEDAKLSIEAKDLICRLLCDVEHRLGTGGAYQIKSHPWFKDVIWDRLYEMEAAFKPEVNGELDTQNFMKFDELDPPIPGKRGSGPSRKMLLTPKDLSFVGYTYKNFDAVKGLHGSLDSQRLSMKQPPTDILNGTAGDYAAELIASEAEMQMLAVSGDPMLP | 516 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11666023 | 11673689 | - | CmaCh01G017180.1 | Cma01g01718 | 287411 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g01718 | 516 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 395 | 468 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Cma01g01718 | 516 | Gene3D | Phosphorylase Kinase; domain 1 | 84 | 178 | - | - | |
Cma01g01718 | 516 | CDD | STKc_NDR_like | 91 | 459 | - | - | |
Cma01g01718 | 516 | SMART | serkin_6 | 93 | 394 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma01g01718 | 516 | Pfam | Protein kinase C terminal domain | 413 | 458 | IPR017892 | GO:0004674|GO:0005524|GO:0006468 | |
Cma01g01718 | 516 | PANTHER | AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN | 13 | 510 | - | - | |
Cma01g01718 | 516 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 212 | 224 | IPR008271 | GO:0004672|GO:0006468 | |
Cma01g01718 | 516 | ProSiteProfiles | Protein kinase domain profile. | 93 | 394 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma01g01718 | 516 | ProSitePatterns | Protein kinases ATP-binding region signature. | 99 | 122 | IPR017441 | GO:0005524 | |
Cma01g01718 | 516 | SUPERFAMILY | Protein kinase-like (PK-like) | 90 | 440 | IPR011009 | - | |
Cma01g01718 | 516 | Gene3D | Transferase(Phosphotransferase) domain 1 | 179 | 411 | - | - | |
Cma01g01718 | 516 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 13 | 510 | - | - | |
Cma01g01718 | 516 | SMART | pkinase_C_6 | 395 | 460 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Cma01g01718 | 516 | Pfam | Protein kinase domain | 94 | 243 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma01g01718 | 516 | Pfam | Protein kinase domain | 286 | 394 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01718 | Cma-Chr1:11666023 | Cma08g01079 | Cma-Chr8:6729107 | 0 | dispersed | |
Cma01g01718 | Cma-Chr1:11666023 | Cma10g00738 | Cma-Chr10:3347570 | 1.90E-170 | wgd | |
Cma01g01718 | Cma-Chr1:11666023 | Cma11g00709 | Cma-Chr11:3453691 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68300 | PF00069 | Pkinase | 4.20E-43 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g01718 | K08790 | - | csv:101212228 | 998.423 |