Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01718 ATGGAGGATCGGGAGGAGGAAGAGAGGCCGGAAGAAGAGGTGCAAGGTTCGAGTCTGACGATGGAGAAAGTGGCGGCCGCTAAGAAGTTTATAGAGAATCATTACAGAGCTCAGATGAAGAACATTCAAGAGCGGAAGGAGAGACGATGGATGTTGGAAAGAAAGTTAGCCTCCTCGGATGTGCCTAAGGAAGAACAAATCAATCTTATCAAAGATTTAGAGCGGAAAGAAACTGAGTTTATGCGACTCAAAAGGCACAAGATTTGTGTTGATGATTTTGAGCTTTTAACCATCATTGGCAGGGGGGCTTTTGGTGAAGTTCGATTATGTCGTGAGAAGAAATCTGGTGACATATATGCCATGAAAAAATTGAAGAAATCTGAAATGCTGATGAGAGGACAGGTGGAACATGTTAGAGCAGAAAGGAATTTATTAGCAGAAGTTGCCAGCCACTGCATAGTGAAGCTTTATTACTCATTCCAGGATGCTGAGTACTTGTACTTGATCATGGAATATCTTCCAGGTGGAGATATGATGACTCTGCTTATGAGAGAGGACACATTGACTGAAAATGTGGCTAAATTTTACATTGCACAGAGTGTTCTTGCTATAGAATCTATCCACAGGCACAACTATATCCACAGGGACATTAAACCTGACAATCTTCTTCTGGACAAAAATGGTCACATGAAGCTTTCTGATTTTGGACTCTGTAAGCCACTGGATTCTTTAACCTTATCAGCACTACATGAAAATAAAGCCATGGATGATGAAAGTTTGGCAGAACCAATGGACATTGATGATAATAGGAGTAGTTGGAAGAGTCCCAGCGAACAGCTATATCACTGGCAAATGAACCGGAGGAAATTGGCATTTTCAACAGTTGGAACACCTGATTACATAGCTCCAGAAGTATTACTCAAAAAAGGATATGGGATGGAGTGCGACTGGTGGTCCCTCGGTGCAATTATGTATGAGATGCTCGTTGGCTATCCTCCATTTTACTCCGATGATCCAATCACCACCTGCAGAAAGATTGTTCACTGGAAAAATCAACTGAAGTTTCCAGAGGATGCTAAGTTGTCAATTGAAGCAAAGGATCTCATCTGTAGGTTGCTTTGCGACGTTGAGCATAGACTTGGTACTGGAGGTGCATACCAAATTAAAAGTCATCCGTGGTTCAAAGATGTCATCTGGGATAGACTTTATGAAATGGAGGCAGCATTTAAGCCTGAAGTTAATGGAGAGCTCGATACCCAGAACTTTATGAAGTTTGATGAATTGGATCCACCTATACCAGGAAAACGTGGCTCCGGACCCTCAAGGAAGATGCTATTGACTCCCAAAGATCTCAGCTTTGTTGGGTATACGTACAAGAACTTCGATGCTGTCAAAGGGCTTCATGGATCACTCGATTCTCAGAGATTGTCAATGAAACAGCCTCCAACTGATATATTAAATGGCACTGCGGGAGACTATGCAGCCGAACTAATAGCCAGTGAGGCCGAAATGCAGATGCTAGCAGTATCAGGAGACCCCATGTTGCCATAA 1551 42.68 MEDREEEERPEEEVQGSSLTMEKVAAAKKFIENHYRAQMKNIQERKERRWMLERKLASSDVPKEEQINLIKDLERKETEFMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSGDIYAMKKLKKSEMLMRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLTENVAKFYIAQSVLAIESIHRHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDSLTLSALHENKAMDDESLAEPMDIDDNRSSWKSPSEQLYHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWKNQLKFPEDAKLSIEAKDLICRLLCDVEHRLGTGGAYQIKSHPWFKDVIWDRLYEMEAAFKPEVNGELDTQNFMKFDELDPPIPGKRGSGPSRKMLLTPKDLSFVGYTYKNFDAVKGLHGSLDSQRLSMKQPPTDILNGTAGDYAAELIASEAEMQMLAVSGDPMLP 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11666023 11673689 - CmaCh01G017180.1 Cma01g01718 287411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01718 516 ProSiteProfiles AGC-kinase C-terminal domain profile. 395 468 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cma01g01718 516 Gene3D Phosphorylase Kinase; domain 1 84 178 - -
Cma01g01718 516 CDD STKc_NDR_like 91 459 - -
Cma01g01718 516 SMART serkin_6 93 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01718 516 Pfam Protein kinase C terminal domain 413 458 IPR017892 GO:0004674|GO:0005524|GO:0006468
Cma01g01718 516 PANTHER AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN 13 510 - -
Cma01g01718 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Cma01g01718 516 ProSiteProfiles Protein kinase domain profile. 93 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01718 516 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
Cma01g01718 516 SUPERFAMILY Protein kinase-like (PK-like) 90 440 IPR011009 -
Cma01g01718 516 Gene3D Transferase(Phosphotransferase) domain 1 179 411 - -
Cma01g01718 516 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 510 - -
Cma01g01718 516 SMART pkinase_C_6 395 460 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cma01g01718 516 Pfam Protein kinase domain 94 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01718 516 Pfam Protein kinase domain 286 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01718 Cma-Chr1:11666023 Cma08g01079 Cma-Chr8:6729107 0 dispersed
Cma01g01718 Cma-Chr1:11666023 Cma10g00738 Cma-Chr10:3347570 1.90E-170 wgd
Cma01g01718 Cma-Chr1:11666023 Cma11g00709 Cma-Chr11:3453691 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68300 PF00069 Pkinase 4.20E-43 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01718 K08790 - csv:101212228 998.423