Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01720 ATGAAATTTGAACCTAGTCTTTGTGTGGCTCGGCGTAAGGTAGGCGGGGAAGAGCTGGAGAGAAGGACGAGGCCGCGGGAGGGTTGCAGCAGCGGAAGCAGAACAGGCGATCAAGCCATGGGAGATGATGCTTATACCAGATACGCCGCCTCCGGCGATAGAGCTGGAAGTGTAGCGAGGTCTGGCCTTTCAAATTACTCTGAAGCACCTCCTTTAACATCTTACCCCAATTCGACCTCCATTGATCCATGGCGCATCCCTCCTGATTATTTGCAGAAAGAACTACAGACAGATTCATCAGGACCTGGTACTTATGGATATACTGACGTAGGAGGCATTAGAAATTATCCAGAACCAGTCATTGGCGGTGTGACATCTGGAGTGAGTGCAACAGGCAACACATCTCCTTTTCATGATGCACAAGCAAGGCAAAGACATGATATTGCAGTGGGCAGTAGTCCAGGGTTGATGGCTATGGCTGACACAGGTCACGAAAAAGCCAATTCTCTTGGTCTCAGAAATCCCGAACGTGTTCCAATTTCAGCTCATGAATCGAACATTCTTTTCGTTGATGGACTTCCTACAGATTGTACCAGAAGGGAAGTTGGTCATCTTTTCCGCCCCTTCATCGGCTATAAAGATATCAGAGTTGTTCACAAGGAGCCCAGACGAAGGGGAGATAAAGCTACGGTATTATGCTTTGTAGAGTTCATTGAAGCAAGATATTCCCGTGCTGCAATGGAAGCTCTTCAAGGTTACAAGTTCGATGACAAAAAACCCGATTCCCTAGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCGTTTACCATCGAACCACGACGACAGGCGATGA 855 47.25 MKFEPSLCVARRKVGGEELERRTRPREGCSSGSRTGDQAMGDDAYTRYAASGDRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLQKELQTDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPERVPISAHESNILFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYSRAAMEALQGYKFDDKKPDSLALKIQFAHFPFRLPSNHDDRR 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11677313 11679731 + CmaCh01G017200.1 Cma01g01720 287413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01720 284 Gene3D - 181 272 IPR012677 -
Cma01g01720 284 CDD RRM_RBPMS_like 186 268 - -
Cma01g01720 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 272 IPR000504 GO:0003723
Cma01g01720 284 SMART rrm1_1 187 264 IPR000504 GO:0003723
Cma01g01720 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 259 IPR000504 GO:0003723
Cma01g01720 284 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 51 277 - -
Cma01g01720 284 PANTHER PROTEIN COUCH POTATO 51 277 - -
Cma01g01720 284 MobiDBLite consensus disorder prediction 58 81 - -
Cma01g01720 284 MobiDBLite consensus disorder prediction 11 86 - -
Cma01g01720 284 SUPERFAMILY RNA-binding domain, RBD 164 259 IPR035979 GO:0003676
Cma01g01720 284 MobiDBLite consensus disorder prediction 11 28 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01720 - - - csv:101211987 385.185
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01720 Cma09g00353 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01720 Cma-Chr1:11677313 Cma15g00612 Cma-Chr15:2892877 2.54E-29 dispersed
Cma01g01720 Cma-Chr1:11677313 Cma09g00353 Cma-Chr9:1459408 1.25E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g115 Blo01g01458 Blo12g01020 Bda01g00629 Bda03g00137 . Bpe02g00497 Bma04g00121 Bma01g02207 . . Cma01g01720 . Car09g00301 . . . Cpe06g00249 . . . . . . . Cla05g01849 Cam05g1973 Cec05g1986 Cco05g2045 Clacu05g1966 Cmu05g1847 Cre05g1971 Cone4ag1677 Cone7ag1275 . . Lsi04g01410 . . . . . . . . Bpe04g00119 . . . . Cmo09g00353 Cma09g00353 . Car01g01335 . . . Bhi09g03127 . . . . . . . . . . . . . . . . Cme07g00205
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004655 2 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01720 Cma_Chr01 FPKM 8.604678 10.651754 13.296063 12.112547 5.928346 5.255561 4.884443 34.739765 32.942917 30.721012