Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01722 ATGAATGATTCCCCCAACGGCAACGCGAGGAAGATGAACGGACGAGATGAAGCTGATGAAGACGACGATTCAATGCCCAAAAATGGCGGAGGAAAGGATTTCAAGGGATTAGTTACTTCTCTGTTGCTGTTGGATGAACAGGAGAGGTGTGACCAGGAAGAACGTGACAGAGCTTCCATGGAGGGGAACATTTCGATGGAGGTCAATCACCGGAAGAAGACGAAAGCCATGCTTGATTTCTACTCCGAAGTGCAAGATTACTATTCTGAAGTCGAACAATCGGACCGTATCAACCGGAAAAAATCGCGATTAGCAGCGAACTCTGTAGCGGTTGCCGCCGCTTCCGATGGATTAGAGAAAATCGAAATCGAAAAATCAACCAAACGCGGCGGCGATGGAGGTAGCAGCGGCGGCCATCACCGGAGACTCTGGGTAAAAGATAGGTCAAAAGCGTGGTGGGATGAATGTAACAGTCCGAATTATCCCGATGAAGAGTTCAAGAAGCAATTCAGAATGAGAAGAGCAACATTCGATATGATTTGCGAAGAGCTTAATTCCGCCATAGCCAAAGAGGACACAACTCTCCGAACCGCCATTCCCGTCCGGCAAAGAGTAGCGGTTTGCCTATGGAGATTAGCCACCGGCGATCCCCTCCGAGTCGTATCCAAGAAATTCGGATTAGGTATTTCGACTTGCCATAAACTGGTCCTCGAGGTCTGCACCGCCATTAGAACAGTTCTAATGCCAAAATACCTCCAATGGCCGGAGGAAGAAACTCTGAAAAGAATCAAAGAAGAATACGAATCAATTTCTGGAATCCCTAACGTGGTCGGATCAATGTACACCACGCACATTCCGATCATCGCTCCAAAAATCAGCGTCGCAGCGTATTTCAACAAGCGCCACACAGAGAGAAATCAAAAGACATCATATTCAATTACAGTCCAAGGCGTGGTGGATCCGAGAGGCGTGTTCACGGACGTGTGCATCGGCTGGCCGGGATCAATGCCGGACGAACAAGTTCTAGAGAAATCGGCTCTGTTTCAAAGGGCAAACGGTGGGCTAATGAAGGGCGTTTGGGTAGTGGGGGGCTCGAGCTACCCATTGCTGGACTGGGTTTTGGTGCCTTACACACAGCAGCATTTCACTTGGACTCAACATGCTTTCAACGAGAAGATCGGGGAGATTCAGAAGGTGGGTAAAGAGGCGTTTGCTCGGCTGAAGGGACGGTGGCGGTGCCTGCAGAAACGGACGGAGGTGAAGCTGCAGGACTTGCCGATGGTACTGGGAGCTTGCTGTGTTCTTCACAACATATGTGAATTGGGGAATGAAGAAATGGATAAAGAACTGTGTACAGAGCTTCAAGACGATGAAGTGGCGCCTGAAGTTGGGCTCAGATCGGTGAGCTCCATGAAAGCTCGAGACGCCATTGCTCATAATTTGCTCCACCATGGCCTTGCAGGGACTTCATTTCTTTAG 1479 49.43 MNDSPNGNARKMNGRDEADEDDDSMPKNGGGKDFKGLVTSLLLLDEQERCDQEERDRASMEGNISMEVNHRKKTKAMLDFYSEVQDYYSEVEQSDRINRKKSRLAANSVAVAAASDGLEKIEIEKSTKRGGDGGSSGGHHRRLWVKDRSKAWWDECNSPNYPDEEFKKQFRMRRATFDMICEELNSAIAKEDTTLRTAIPVRQRVAVCLWRLATGDPLRVVSKKFGLGISTCHKLVLEVCTAIRTVLMPKYLQWPEEETLKRIKEEYESISGIPNVVGSMYTTHIPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVDPRGVFTDVCIGWPGSMPDEQVLEKSALFQRANGGLMKGVWVVGGSSYPLLDWVLVPYTQQHFTWTQHAFNEKIGEIQKVGKEAFARLKGRWRCLQKRTEVKLQDLPMVLGACCVLHNICELGNEEMDKELCTELQDDEVAPEVGLRSVSSMKARDAIAHNLLHHGLAGTSFL 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11681758 11683236 - CmaCh01G017220.1 Cma01g01722 287415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01722 492 PANTHER UNCHARACTERIZED 29 491 IPR045249 -
Cma01g01722 492 Coils Coil 43 63 - -
Cma01g01722 492 MobiDBLite consensus disorder prediction 10 29 - -
Cma01g01722 492 PANTHER NUCLEASE 29 491 - -
Cma01g01722 492 MobiDBLite consensus disorder prediction 1 34 - -
Cma01g01722 492 Pfam DDE superfamily endonuclease 281 437 IPR027806 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01722 - - - bhj:120087340 886.715
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01722 Cma09g00351 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01722 Cma-Chr1:11681758 Cma04g01204 Cma-Chr4:6131017 4.29E-40 dispersed
Cma01g01722 Cma-Chr1:11681758 Cma10g00737 Cma-Chr10:3345283 0 wgd
Cma01g01722 Cma-Chr1:11681758 Cma11g00707 Cma-Chr11:3451195 0 wgd
Cma01g01722 Cma-Chr1:11681758 Cma09g00351 Cma-Chr9:1456519 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g114 Blo01g01511 . . . . . . . . . Cma01g01722 . Car09g00299 . . . . . . . . . . . Cla05g01848 Cam05g1972 Cec05g1985 Cco05g2044 Clacu05g1965 Cmu05g1846 Cre05g1970 Cone4ag1676 Cone7ag1276 Cone17ag0936 Cone20ag0279 Lsi04g01411 . . . . . . . . . . . Sed13g1880 Cmo01g01791 Cmo09g00351 Cma09g00351 . Car01g01336 . . Cpe02g00274 Bhi09g03130 Tan01g4604 Cmetu07g1835 . Hepe01g1899 Mch11g0431 . . . . . . . . . . . Cme07g00207
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001890 0 2 1 0 0 2 4 2 2 2 2 2 4 2 2 4 2 7 4 2 2 2 2 2 3 2 2 3 2 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01722 Cma_Chr01 FPKM 9.849898 11.858808 10.321215 11.950144 3.508464 3.169835 3.608473 7.953522 7.316083 6.543121