Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01725 ATGCCGTTTCAAGGAAAAATGCGATTTTCTACCTCTTTGGGGCTCTGTGTTATGGCAGCGGCTCTGTTTTTACCGCCATCCGACGCCCAGCTGCCTGTGCCCTCCACCGAACAGCTTTGTATCAGCCAGTGCGTCACCTGCCCAGTGGTTTGTACCACGCCGACGCCGACGCCGACGCCGCGCTCTTACAGCTCTTACATTCCGTCGCCACCGCCACCGCCGCCTGCGTTTTATGGCGGCTATATGGGGCCGCCGCCGGCTTTGACATCGTCGTATTTTTTCCGGGGCCCGCCGCCTCCGGTTGCGAATTATGTTTCGGGAGCACAACCGTCGGGGCAGATGCCGCAGACGATCAGGGCTGTTGTACCAGTCGCTACGGAGGTCAGGAAAATGGAGACCGAGAATGCAGAGGAGCTTGCATCGTCGATGGCTTCCACTTTTCTTCCCCTCGCCTCCGCCGCGCAGCAGCCATATGTGTCGGAGCTCCTTTCCTTCACGCTCGATCGCCTAAACAAGGAACCGGAGCTTCTTCAGGTTGATGCCGAGCGAATTCGGAGGCAAATACAAGAGGTGGCAGTCGGCAACTACCGAGCTTTCATTGCTGCCGCCGATGCGTTGCTTGCAATTCGGGAGGAAGTATCTTCCATCGATAAGCATCTCGAATCTTTGATATCTGAGATTCCAAATCTGACATCGGGTTGCACAGAGTTTATTGAATCTGCGGAACAGATTCTAGAGAAGAGGAAGATGAACCAGATATTGTTAACACATCACAGTACTCTGCTTGATTTACTTGAAATTCCTCAGCTTATGGACACGTGTGTAAGAAATGGAAATTACGATGAAGCTCTTGACTTGGAAGCATTTGTTGCCAAACTTTCAACCATGCACCCAAAAATACCAGTTATTCAAGCCCTGGTGGCAGAAGTCAGGCAGACTACACAATCTCTTCTTTCTCAACTTCTCCAGAAACTTCGCTCAAATATTCAGTTACCTGAATGCCTCCGCATCATTGGATATTTACGTCGAATTGGAGTATTTAGTGAATATGAAATGCGTTTGCAGTTTTTAAGATGTCGAGAGGCATGGCTGACTGGAATTCTTGAAGATCTTGACCAGAGAAATGCTTATGAGTATTTGAAAGGAATGATTAATTGTCATAGGACACATCTTTTCGATGTTGTTAACCAATATCGAGCAATCTTTGCTGATGATACGTCAGGAAATGAAGAAAATTATGACAGTGGGCTTCTGTTTAGTTGGTCCATGCATCAGATTACTTCTCATCTAAAGACACTCAAAATAATGCTGCCAAAGATAACAGAAGGAGGATCCCTATCGAATATATTAGAACAGTGCATGTACTGTGCCATGGGGCTTGGCTGGGTCGGAATGGATTTTCGCGGTTTGCTTCCTCCACTTTTTGAAGAGGCAGTTCTCAATCTATTTGCAAAAAATATGGGTACTGCAATCGATAACTTTCAGTTAGTTCTGGATTCCCATCGTTGGGTTCCATTACCAGCAGTTGGTTTCACCGCAAGCAATATTGGTGAGGAAAGTCAGGAAGACGTGACTCCACCTTCGTATTTGATGGAACATCCACCTCTTGCTGTTTTTGTAAATGGTGTATCAGCAGCCTTAAATGAACTTCGCCATTGTGCCCCGTTGAGTTTGAAGCATGTGATAGCTCAGGAATTAATAAAAGGATTGCAGGCCGTTTCCGACTCTTTATTGAGATACAACACAACTCGCATGCTAAAAGATAATGAGTCTGGACTTTTTCTCCAGCTTTGCCGAGCATTTATCGAGGTTGCTTATCCACATTGTGCCACATGTTTCGGTCGCTGTTATCCCGGCGGGGCAGTGCTTATATTAGACGCAAAAAATTTGTACGATGGCATCGGTCGCCTATTAACCATCTCTTCCTCAAGAGACCTCCCGGCAACAGTCAATAATGCGGAAGAGCAAGTTGCAGAAAATGGTGACATGCCTGCGCTGGAAAATGGAGCAACACCGGATGCTGATAAGGACCAGAAAAGCCCCCCTTTGCACAGCAATGAAAAACAAAGCGAGGGTGAAGAAGCAGAACAGAGCAATTAA 2100 47.05 MPFQGKMRFSTSLGLCVMAAALFLPPSDAQLPVPSTEQLCISQCVTCPVVCTTPTPTPTPRSYSSYIPSPPPPPPAFYGGYMGPPPALTSSYFFRGPPPPVANYVSGAQPSGQMPQTIRAVVPVATEVRKMETENAEELASSMASTFLPLASAAQQPYVSELLSFTLDRLNKEPELLQVDAERIRRQIQEVAVGNYRAFIAAADALLAIREEVSSIDKHLESLISEIPNLTSGCTEFIESAEQILEKRKMNQILLTHHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAFVAKLSTMHPKIPVIQALVAEVRQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQRNAYEYLKGMINCHRTHLFDVVNQYRAIFADDTSGNEENYDSGLLFSWSMHQITSHLKTLKIMLPKITEGGSLSNILEQCMYCAMGLGWVGMDFRGLLPPLFEEAVLNLFAKNMGTAIDNFQLVLDSHRWVPLPAVGFTASNIGEESQEDVTPPSYLMEHPPLAVFVNGVSAALNELRHCAPLSLKHVIAQELIKGLQAVSDSLLRYNTTRMLKDNESGLFLQLCRAFIEVAYPHCATCFGRCYPGGAVLILDAKNLYDGIGRLLTISSSRDLPATVNNAEEQVAENGDMPALENGATPDADKDQKSPPLHSNEKQSEGEEAEQSN 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11692416 11698486 + CmaCh01G017250.1 Cma01g01725 287418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01725 699 MobiDBLite consensus disorder prediction 672 699 - -
Cma01g01725 699 MobiDBLite consensus disorder prediction 654 699 - -
Cma01g01725 699 PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 8 136 654 IPR007255 GO:0017119
Cma01g01725 699 Pfam Dor1-like family 159 492 IPR007255 GO:0017119
Cma01g01725 699 SUPERFAMILY Cullin repeat-like 261 478 IPR016159 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01725 K20295 COG8; conserved oligomeric Golgi complex subunit 8 - csv:101211255 1035.79
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01725 Cma09g00348 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01725 Cma-Chr1:11692416 Cma09g00348 Cma-Chr9:1443218 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g111 . Blo12g01018 . Bda03g00138 . . Bma04g00122 . . . Cma01g01725 . Car09g00296 . . . Cpe06g00247 . . . . . . . Cla05g01845 . . Cco05g2041 . Cmu05g1843 . Cone4ag1674 Cone7ag1279 . . Lsi04g01414 . . . . . . . . Bpe04g00120 . . Sed11g1825 Cmo01g01788 Cmo09g00348 Cma09g00348 . Car01g01338 . . Cpe02g00271 Bhi09g03133 Tan01g4607 Cmetu07g2154 . Hepe01g1897 Mch11g0428 . . . . . . . . . . . Cme07g00210
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006496 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01725 Cma_Chr01 FPKM 8.50521 9.370269 7.696109 8.078456 11.591334 10.259519 10.404788 10.728857 10.64218 11.241951