Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01728 ATGGAAGAGAGTAATTCTAAAAGCAAGTTCAAGAGGGTTTGCGTCTTCTGCGGCAGCAACTCTGGCCATCGCAAAGTCTTCAGCGATGCCGCTCTTGATTTGGGAAATGAACTGGTTGAGAGGAAGATTGATTTGGTGTACGGTGGCGGAAGTGTTGGTTTGATGGGCTTGATATCACAAACTGTATACGATGGAGGCTGCCATGTTCTTGGGATCATTCCGAAAGCTCTGATGCCTCATGAGATTTCTGGGGAAACTGTGGGAGAGGTAAGAACAGTTTTGGACATGCATGAACGAAAAGCTGCGATGGCTCGAGAATCCGATGCTTTCATTGCTCTTCCTGGAGGGTATGGGACTATGGAAGAGCTGTTGGAGATGATAACGTGGGCGCAACTCGGTATCCACAAGAAACCAATTGGCCTGCTTAATGTTGATGGTTACTACAACTCTTTGTTGGCACTATTCGATAATGGCGTGGTTGAAGGTTTCATTAAGCCCGTTGCTCGAGAAATTGTGATATCTGCTCCAACAGCAAAGGAACTAATGGAAAAAATGGAGGAACATACTCCTTTTCGTGAACACGTTGCTCCCCACGAAAGCTGGGGAACGGAGCACCTCGGGGATTATCCTAGCCAAGAAAACAAACCATGA 651 46.7 MEESNSKSKFKRVCVFCGSNSGHRKVFSDAALDLGNELVERKIDLVYGGGSVGLMGLISQTVYDGGCHVLGIIPKALMPHEISGETVGEVRTVLDMHERKAAMARESDAFIALPGGYGTMEELLEMITWAQLGIHKKPIGLLNVDGYYNSLLALFDNGVVEGFIKPVAREIVISAPTAKELMEKMEEHTPFREHVAPHESWGTEHLGDYPSQENKP 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11712513 11714626 - CmaCh01G017280.1 Cma01g01728 287421

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01728 216 Pfam Possible lysine decarboxylase 55 185 IPR031100 -
Cma01g01728 216 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE 8 206 - -
Cma01g01728 216 TIGRFAM TIGR00730: TIGR00730 family protein 11 187 IPR005269 GO:0009691|GO:0016787
Cma01g01728 216 PANTHER LOG FAMILY PROTEIN YJL055W 8 206 - -
Cma01g01728 216 MobiDBLite consensus disorder prediction 194 216 - -
Cma01g01728 216 Gene3D - 1 187 - -
Cma01g01728 216 SUPERFAMILY MCP/YpsA-like 10 188 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01728 K22522 LOG; cytokinin riboside 5'-monophosphate phosphoribohydrolase [EC:3.2.2.-] - csv:101210270 423.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01728 Cma-Chr1:11712513 Cma07g00922 Cma-Chr7:4411401 4.45E-104 dispersed
Cma01g01728 Cma-Chr1:11712513 Cma09g00344 Cma-Chr9:1414108 3.66E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g81 . . . . . . . . . . Cma01g01728 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00278 Bda01g01332 . . . Bma01g00920 . . . . . . . . . Cpe02g00268 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006617 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01728 Cma_Chr01 FPKM 40.810917 43.048382 56.403214 56.462502 29.874815 25.760126 25.682713 2.490984 2.317022 2.895148