Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01729 ATGGGGGGTTCTGGGAAATGGATGAAGGTTCTTATAGGACAGAGGAAGTCTGATAAGGAAGACAATGTGAGCAAAACTAAGAAATGGAGGCTATGGAGGAGCCCTTCAGGGGATTTGAGCTCTGCTTGGAAGGCTTATAAAGGGGCACATAAAACAGCTTCTGAAGGCTCTCATTCTCCTCGAGCCCCTGATTCTTTCACCGTCGCTGTCGCCACTGTCCTCCGTGCTCCGCCCAAAGATTTCAGGCTGGTTCGCCAAGAATGGGCTGCAATTCGTATCCAAACTGCATTTCGCGGTTTCTTGTCTAGGAGGGCTCTTAGGGCGTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTGTTACCCTGAGGTGCATGCAGGCTTTGGTTCGAGTTCAAGCTCGAGTCAGGGCTCGTCGTGTGAGGATGTCAGTAGAGGGACAGGCTGTGCAGCAATTGCTTGATGTACATCGCAGCAGGGCTGATCTCTTGAAGCAAGCTGAGGAGGGTTGGTGTGAGAGCAAAGGGACATTGGAAGATATCAAAGCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCCATTGCATACTCTCTTGTTCAAAAGCAATTGAAGGCAACACCAAGCTCAACCTTGCGAATGGATGCTTCGGTTTACGCTCTTAAGAATTATAAGTTCGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGTGGCGAAGCCATGGGAGACTAGGTTGATGGAACAATCACGCACTGATTCGATTGAAGTCACTCCACCTTCAAAGAGCTGTACAGAGTCTGTTGTGTCTAAACATTCCAAAGGTTCTGAACCAAGTTTGGTGAAAGTTCGGAAGAACAATGTATCAACTAGGATATCTGCTAAACCTCCCTCAAGTGGGCAAGCTCGTTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGATGAGAGCTCTGCTTCATCTTCAATCTGCACATCGACGACTCCCGTTTCAGGGCATGCTTTCTCAACCATAGAAAGAACAGATAACAGCAGTAACAGTAGGCCGAGTTACATGAACCTTACCGAGTCGACAAGGGCGAAGCAGAAGACAAATAGTCACTTATCGCACCGAATTCAAAGGCAGTCCATGGATGAATTTCAATTCCTTAAGAAGTCGGCAGCTTTCTCCAATGGGGATTCTAAGAGCAGTGCTGGCTCTGATTCATCAGTCAACCCCTTCAAGCCATTGATGCTGCCAACCCAATTGGGTAAGAATGGAACAAAGCTAAGGTCATGA 1326 47.89 MGGSGKWMKVLIGQRKSDKEDNVSKTKKWRLWRSPSGDLSSAWKAYKGAHKTASEGSHSPRAPDSFTVAVATVLRAPPKDFRLVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLDVHRSRADLLKQAEEGWCESKGTLEDIKAKLQMRQDGAFKRERAIAYSLVQKQLKATPSSTLRMDASVYALKNYKFDKNNWGWSWLERWMVAKPWETRLMEQSRTDSIEVTPPSKSCTESVVSKHSKGSEPSLVKVRKNNVSTRISAKPPSSGQARSCSSPSSDFWYDESSASSSICTSTTPVSGHAFSTIERTDNSSNSRPSYMNLTESTRAKQKTNSHLSHRIQRQSMDEFQFLKKSAAFSNGDSKSSAGSDSSVNPFKPLMLPTQLGKNGTKLRS 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11717258 11719169 + CmaCh01G017290.1 Cma01g01729 287422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01729 441 MobiDBLite consensus disorder prediction 266 322 - -
Cma01g01729 441 ProSiteProfiles IQ motif profile. 86 114 IPR000048 GO:0005515
Cma01g01729 441 PANTHER IQ-DOMAIN 5-RELATED 1 436 - -
Cma01g01729 441 Pfam IQ calmodulin-binding motif 88 107 IPR000048 GO:0005515
Cma01g01729 441 Pfam IQ calmodulin-binding motif 110 127 IPR000048 GO:0005515
Cma01g01729 441 MobiDBLite consensus disorder prediction 267 322 - -
Cma01g01729 441 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 436 - -
Cma01g01729 441 MobiDBLite consensus disorder prediction 406 425 - -
Cma01g01729 441 MobiDBLite consensus disorder prediction 406 441 - -
Cma01g01729 441 ProSiteProfiles IQ motif profile. 110 137 IPR000048 GO:0005515
Cma01g01729 441 SMART iq_5 108 129 IPR000048 GO:0005515
Cma01g01729 441 SMART iq_5 85 107 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01729 - - - csv:101210019 763.066
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01729 Cma-Chr1:11717258 Cma17g00716 Cma-Chr17:5896515 1.36E-77 dispersed
Cma01g01729 Cma-Chr1:11717258 Cma09g00343 Cma-Chr9:1410126 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g01355 CCT,CST,ECH 99 267 IQD Protein Family AT3G09710 55.2 4.6e-47 186.4
Cma06g00359 CCT,ECH 1 266 IQD Protein Family AT5G03040 50.9 5.5e-61 232.6
Cma15g00434 CCT,CST,ECH 2 464 IQD Protein Family AT3G52290 54.5 6.7e-101 365.2
Cma04g02600 CCT,CST,ECH 1 473 IQD Protein Family AT3G52290 54.7 1.1e-100 364.4
Cma10g00857 CCT 1 394 IQD Protein Family AT3G22190 56.8 1.1e-92 337.8
Cma11g00912 CCT 43 448 IQD Protein Family AT3G22190 55.0 5.8e-89 325.5
Cma01g01729 . 1 434 IQD Protein Family AT2G26180 59.5 3.9e-114 409.1
Cma09g00343 . 1 438 IQD Protein Family AT2G26180 58.0 1.1e-111 401.0
Cma07g00203 . 1 279 IQD Protein Family AT2G33990 51.6 4.0e-64 242.3
Cma16g00415 . 40 223 IQD Protein Family AT2G33990 52.9 1.2e-47 187.6
Cma07g00203 . 1 253 IQD Protein Family AT3G15050 51.4 7.7e-60 228.0
Cma16g00415 . 43 216 IQD Protein Family AT3G15050 61.0 4.1e-53 205.7
Cma06g00946 . 1 500 IQD Protein Family AT4G00820 55.7 8.8e-127 451.4
Cma06g00946 . 1 500 IQD Protein Family AT1G01110 52.7 4.0e-124 442.6
Cma08g00741 CCT,CST,ECH 220 616 IQD Protein Family AT3G16490 51.6 5.9e-72 268.9
Cma17g00759 CCT,CST,ECH 1 389 IQD Protein Family AT3G16490 51.5 4.2e-70 262.7
Cma10g00673 CST 1 376 IQD Protein Family AT3G16490 53.1 5.2e-68 255.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01729 Cma_Chr01 FPKM 3.069508 3.628493 0.326891 0.214857 29.812838 34.189068 31.554525 0.0 0.0 0.0