Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01729 ATGGGGGGTTCTGGGAAATGGATGAAGGTTCTTATAGGACAGAGGAAGTCTGATAAGGAAGACAATGTGAGCAAAACTAAGAAATGGAGGCTATGGAGGAGCCCTTCAGGGGATTTGAGCTCTGCTTGGAAGGCTTATAAAGGGGCACATAAAACAGCTTCTGAAGGCTCTCATTCTCCTCGAGCCCCTGATTCTTTCACCGTCGCTGTCGCCACTGTCCTCCGTGCTCCGCCCAAAGATTTCAGGCTGGTTCGCCAAGAATGGGCTGCAATTCGTATCCAAACTGCATTTCGCGGTTTCTTGTCTAGGAGGGCTCTTAGGGCGTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTGTTACCCTGAGGTGCATGCAGGCTTTGGTTCGAGTTCAAGCTCGAGTCAGGGCTCGTCGTGTGAGGATGTCAGTAGAGGGACAGGCTGTGCAGCAATTGCTTGATGTACATCGCAGCAGGGCTGATCTCTTGAAGCAAGCTGAGGAGGGTTGGTGTGAGAGCAAAGGGACATTGGAAGATATCAAAGCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCCATTGCATACTCTCTTGTTCAAAAGCAATTGAAGGCAACACCAAGCTCAACCTTGCGAATGGATGCTTCGGTTTACGCTCTTAAGAATTATAAGTTCGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGTGGCGAAGCCATGGGAGACTAGGTTGATGGAACAATCACGCACTGATTCGATTGAAGTCACTCCACCTTCAAAGAGCTGTACAGAGTCTGTTGTGTCTAAACATTCCAAAGGTTCTGAACCAAGTTTGGTGAAAGTTCGGAAGAACAATGTATCAACTAGGATATCTGCTAAACCTCCCTCAAGTGGGCAAGCTCGTTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGATGAGAGCTCTGCTTCATCTTCAATCTGCACATCGACGACTCCCGTTTCAGGGCATGCTTTCTCAACCATAGAAAGAACAGATAACAGCAGTAACAGTAGGCCGAGTTACATGAACCTTACCGAGTCGACAAGGGCGAAGCAGAAGACAAATAGTCACTTATCGCACCGAATTCAAAGGCAGTCCATGGATGAATTTCAATTCCTTAAGAAGTCGGCAGCTTTCTCCAATGGGGATTCTAAGAGCAGTGCTGGCTCTGATTCATCAGTCAACCCCTTCAAGCCATTGATGCTGCCAACCCAATTGGGTAAGAATGGAACAAAGCTAAGGTCATGA 1326 47.89 MGGSGKWMKVLIGQRKSDKEDNVSKTKKWRLWRSPSGDLSSAWKAYKGAHKTASEGSHSPRAPDSFTVAVATVLRAPPKDFRLVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLDVHRSRADLLKQAEEGWCESKGTLEDIKAKLQMRQDGAFKRERAIAYSLVQKQLKATPSSTLRMDASVYALKNYKFDKNNWGWSWLERWMVAKPWETRLMEQSRTDSIEVTPPSKSCTESVVSKHSKGSEPSLVKVRKNNVSTRISAKPPSSGQARSCSSPSSDFWYDESSASSSICTSTTPVSGHAFSTIERTDNSSNSRPSYMNLTESTRAKQKTNSHLSHRIQRQSMDEFQFLKKSAAFSNGDSKSSAGSDSSVNPFKPLMLPTQLGKNGTKLRS 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11717258 11719169 + CmaCh01G017290.1 Cma01g01729 287422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01729 441 MobiDBLite consensus disorder prediction 266 322 - -
Cma01g01729 441 ProSiteProfiles IQ motif profile. 86 114 IPR000048 GO:0005515
Cma01g01729 441 PANTHER IQ-DOMAIN 5-RELATED 1 436 - -
Cma01g01729 441 Pfam IQ calmodulin-binding motif 88 107 IPR000048 GO:0005515
Cma01g01729 441 Pfam IQ calmodulin-binding motif 110 127 IPR000048 GO:0005515
Cma01g01729 441 MobiDBLite consensus disorder prediction 267 322 - -
Cma01g01729 441 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 436 - -
Cma01g01729 441 MobiDBLite consensus disorder prediction 406 425 - -
Cma01g01729 441 MobiDBLite consensus disorder prediction 406 441 - -
Cma01g01729 441 ProSiteProfiles IQ motif profile. 110 137 IPR000048 GO:0005515
Cma01g01729 441 SMART iq_5 108 129 IPR000048 GO:0005515
Cma01g01729 441 SMART iq_5 85 107 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01729 Cma-Chr1:11717258 Cma17g00716 Cma-Chr17:5896515 1.36E-77 dispersed
Cma01g01729 Cma-Chr1:11717258 Cma09g00343 Cma-Chr9:1410126 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01729 - - csv:101210019 763.066