Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g01734 | ATGATGAAGAAAGGAAATTTAACGGTGGAGGAACATTCGCCGCCGCCGCCACCGCCACCGTCGAAGAAGAAGCGGAATCTTCCCGGGAATCCAGACCCAGATGCTGAAGTGATAGCTTTGTCACCAAAAGCGCTTTTGACAACGAATAGATTCATATGTGAGATTTGCAACAAAGGGTTTCAAAGAGATCAAAATCTTCAACTTCATAGAAGAGGGCATAATCTTCCATGGAAGCTAAAACAAAGAAGCAATAAGGAAGTTAGGAAGAAGGTTTACGTGTGTCCCGAGCCGACTTGCGTGCACCATCACCCGTCGAGAGCCCTCGGCGATCTTACCGGAATCAAGAAGCATTTTTGTCGGAAGCACGGTGAGAAGAAATGGAAGTGTGAGAAATGTTCGAAGAGATATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAGATTTGTGGCACTCGAGAGTATAGATGTGATTGTGGAACCCTCTTTTCCAGGAGGGACAGTTTCATAACCCATAGAGCCTTTTGCGATGCGTTGGCTCAAGAGAGTACCAATTTTGCATCATCAGCCATGAACAATAGCAACCCAATTCAACCAATTTTCTCAACACTGCGCCAATTCCCACTCAAAACTGAAAACCAAGACCCTTTTTATCCTTCAACTTCCAACATCCTCAATCCCTTTAACCCTAACCCTACTTCGATCGGATTCGGGTTAGCCGGTCCTGGTTCGAGTCTTAATCCTGTGTTTGGTTCTGCATGGGAAATGAACTCTCCAAACATGATGGCTTTTGAAGAACCATCCTTTGAAGAAGCTCTAAATGGGATCTTGATGAATAATCGAGCTAATAAAGACGGCGACAAATGCAGCGGCGGTGGCAGTGGCGGTGGCGCGGAGGAGATAACGAGAGATTTATTGGGGTTGAGAGCTTTGGCTCGACAGCCCGATCAGCGTATGTTTGAGAATGAGATAGTAAACGACAATCTGAATTTGGGTTCTTCTTCTTCTTCCTCGATGTTTGGATTGCATCTGAATCATCAAACCCAGACTATGGCGAAACCACCCGTGCGACAAATCGTTTTAGTAAATGGGCTTTTTTGTTGCAAGAAAAGAACAGGCCCAATAAAAGAAACAAAAACCCAAATACGGCCCAAAGGCCCGATTATAGTACGGGCCGACTATTGGGCTGGGGGAAGGAGGAGGTTGTCGAAGCAAATTGCGGACGATAAGTCGTCTGGCTGTACATCGTTTAGGGCGAAACCATCAGTGCGACAAATCGTTTTAGTAAATGGGCTTTTTTGTTTGAAGAAAATAATAGGTCCAATAAAAGAAATAAAAGCCCAAATACGGCCCAAAGGCCCGATTATAGTACGGGCCGGCGGAAGGAGGAGGTCGGCGAAGCAAATTGATGGGGATGGGGAAAAATCTTGGAGCTTGGTGATATGCGACTTAGGATGTGTTTTTATGCTGCAGGTTTCGAGGAATAATTCGGAATTCGGACAGTTAAAGAATGCGTTGATTAATGCATATTATCCCGTCAATAAGGGCGGAGTTGGTGGTGGAGATGTCAATCGTCATGCGTGTGAAGTCAATCTTGCATGGTTTAAATCATCTGTATGTCTATTTTCTTATCCTCCTTCTTGCTCTGCAGTATATAAATTATTGACGTCTCAGAAGAGATATCAGTCCAGCTATGTCGGTAACCTAGCTCGAAGAGTGCGGGATGCAGATGAGGCCAGTGAAGTTGCTCATCTTAAAGAACTCTTCCGGCGAAACGATCCTGAAGCTGTCATAAGATTATTTGAAACTCAGCCATCGTTGCACCACAATGCTACTGCCCTTTCTGAATATGTTAAAGCATTGGTGAAAGTTGACCGGCTGGATGAAAGTGAACTACTTAAGACATTGCAGAGAGGCATTTTAAATGCATCTAGGGGAGAGGGAAGCATTGGTAGCATAGCGGCTTTCAGTAATGTTGGTAAACAGTCAAAAGACGGTATTCTTGGAACCTCAAGTGCTCCCATCCATATGGTGGCGTCTGAAGGGGGGCAATTTAAGGAGCAGCTCTGGCGTACAATTCGCACTATTGCACTAGCCTTTCTATTGATTTCTGGTGTAGGAGCACTGATTGAGGATAGAGGAATTAGCAAAGGTCTGGGTTTGAATGAAGAAGTGCAACCTAGCATGGAATCTAATACAAAATTCAATGATGTCAAGGGTGTGGATGAGGCTAAGGCAGAGCTTGAAGAAATTGTTCACTACCTTCGAGATCCCAAGCGGTTCACTCGTTTGGGCGGCAAACTTCCAAAAGGTGTTCTACTTGTTGGTCCACCTGGAACTGGCAAGACAATGTTAGCAAGAGCAATTGCTGGAGAAGCTGGAGTACCATTCTTTTCCTGCAGTGGCAGTGAGTTTGAAGAGATGTTTGTTGGTGTTGGGGCTAGAAGAGTGAGGGATTTATTTTCAGCTGCAAAGAAGAGGTCACCATGTATTATTTTCATTGACGAGATTGATGCCATTGGTGGAAGCCGTAATCCCAAGGACCAACAGTACATGAAAATGACTCTTAACCAGTTACTCGTTGAACTTGATGGTTTCAAGCAAAATGAAGGAATAATTGTCATTGCGGCAACCAACTTTCCAGAGTCTTTGGACAAGGCGTTAGTAAGACCGGGTCGATTTGATCGGCATATTGTTGTACCTAATCCAGATGTTGAAGGACGAAGGCAGATCCTGGAGTCACATATGTCCAAGATATTGAAGGCAGATGACGTCGATATGATGATCATTGCTAGAGGAACTCCTGGTTTTTCTGGTGCTGATCTTGCAAATTTAGTCAACATAGCTGCTTTAAAGGCTGCAATGGATGGTGCTAAAGCAGTGAGCATGGATGATCTGGAATTTGCAAAGGACAAGATTATGATGGGAAGTGAGCGCAAGTCTGCTGTCATTTCTGATGAGTCGCGAAAATTGACTGCATTCCATGAGGGTGGGCATGCCCTTGTGGCAATTCACACCGATGGAGCGCTCCCAGTTCATAAGGCCACAATTGTTCCAAGAGGAATGGCTCTTGGCATGGTTGCACAATTGCCTGATAAGGATGAGACTAGTGTCTCCCGGAAACAGATGCTTGCCCGTCTCGATGTTTGCATGGGAGGGCGAGTTGCAGAAGAGCTCATTTTTGGAGAAAATGAAGTTACTTCTGGTGCCTCATCTGATTTGCAACAAGCAACTTCTCTTGCTAGAGCTATGGTTACCAAGTATGGAATGAGCAAAGAAGTTGGGCTTGTCGCTCACAATTATGACGACAATGGGAAAAGCATGAGCACAGAAACAAGGCTTCTTATTGAAAAGGAAGTGAAGAACTTCTTAGGAGCGGCGTATGCCAATGCAAAAACAATTCTTACCACCCATAACAAGGAGCTCCATGCCCTTGCAAATGCTTTGCTCGAGCATGAAACACTCTCTGGTAGTCAGATCATGGCTCTTCTTGCACAAGTAAACTCTCAGCAGCAGCATCAACAACAACATCAACAATTAGTTTCCACTCAGAGTAGCTCACAGTCCAACCCTGTGCCACCCTCAGCACCAAACCCTGCTGCATCTGCGGCCGCTGCAGCCGCGGCCGCAGCGGCAACTGCTGCAGCCAAGGCGAAAGGCATTGCTCCTGTTGGATCTTAA | 3678 | 45.41 | MMKKGNLTVEEHSPPPPPPPSKKKRNLPGNPDPDAEVIALSPKALLTTNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVRKKVYVCPEPTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESTNFASSAMNNSNPIQPIFSTLRQFPLKTENQDPFYPSTSNILNPFNPNPTSIGFGLAGPGSSLNPVFGSAWEMNSPNMMAFEEPSFEEALNGILMNNRANKDGDKCSGGGSGGGAEEITRDLLGLRALARQPDQRMFENEIVNDNLNLGSSSSSSMFGLHLNHQTQTMAKPPVRQIVLVNGLFCCKKRTGPIKETKTQIRPKGPIIVRADYWAGGRRRLSKQIADDKSSGCTSFRAKPSVRQIVLVNGLFCLKKIIGPIKEIKAQIRPKGPIIVRAGGRRRSAKQIDGDGEKSWSLVICDLGCVFMLQVSRNNSEFGQLKNALINAYYPVNKGGVGGGDVNRHACEVNLAWFKSSVCLFSYPPSCSAVYKLLTSQKRYQSSYVGNLARRVRDADEASEVAHLKELFRRNDPEAVIRLFETQPSLHHNATALSEYVKALVKVDRLDESELLKTLQRGILNASRGEGSIGSIAAFSNVGKQSKDGILGTSSAPIHMVASEGGQFKEQLWRTIRTIALAFLLISGVGALIEDRGISKGLGLNEEVQPSMESNTKFNDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKILKADDVDMMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVSMDDLEFAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAIHTDGALPVHKATIVPRGMALGMVAQLPDKDETSVSRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLQQATSLARAMVTKYGMSKEVGLVAHNYDDNGKSMSTETRLLIEKEVKNFLGAAYANAKTILTTHNKELHALANALLEHETLSGSQIMALLAQVNSQQQHQQQHQQLVSTQSSSQSNPVPPSAPNPAASAAAAAAAAAATAAAKAKGIAPVGS | 1225 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11734296 | 11741213 | + | CmaCh01G017340.1 | Cma01g01734 | 287427 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g01734 | 1225 | ProSitePatterns | AAA-protein family signature. | 871 | 889 | IPR003960 | GO:0005524|GO:0016887 | |
Cma01g01734 | 1225 | Gene3D | - | 719 | 901 | IPR027417 | - | |
Cma01g01734 | 1225 | SMART | c2h2final6 | 127 | 147 | IPR013087 | - | |
Cma01g01734 | 1225 | SMART | c2h2final6 | 51 | 73 | IPR013087 | - | |
Cma01g01734 | 1225 | PANTHER | ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 4, MITOCHONDRIAL-LIKE | 555 | 1200 | - | - | |
Cma01g01734 | 1225 | MobiDBLite | consensus disorder prediction | 1170 | 1202 | - | - | |
Cma01g01734 | 1225 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 53 | 73 | IPR013087 | - | |
Cma01g01734 | 1225 | TIGRFAM | FtsH_fam: ATP-dependent metallopeptidase HflB | 726 | 1163 | IPR005936 | GO:0004176|GO:0004222|GO:0016020 | |
Cma01g01734 | 1225 | Pfam | AAA+ lid domain | 923 | 966 | IPR041569 | - | |
Cma01g01734 | 1225 | SUPERFAMILY | beta-beta-alpha zinc fingers | 50 | 147 | IPR036236 | - | |
Cma01g01734 | 1225 | SMART | AAA_5 | 767 | 903 | IPR003593 | - | |
Cma01g01734 | 1225 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 731 | 987 | IPR027417 | - | |
Cma01g01734 | 1225 | Hamap | ATP-dependent zinc metalloprotease FtsH [ftsH]. | 43 | 1194 | IPR005936 | GO:0004176|GO:0004222|GO:0016020 | |
Cma01g01734 | 1225 | SUPERFAMILY | FtsH protease domain-like | 982 | 1167 | IPR037219 | GO:0004176|GO:0004222|GO:0005524|GO:0006508 | |
Cma01g01734 | 1225 | Gene3D | - | 902 | 975 | - | - | |
Cma01g01734 | 1225 | PANTHER | METALLOPROTEASE M41 FTSH | 555 | 1200 | - | - | |
Cma01g01734 | 1225 | Pfam | Peptidase family M41 | 982 | 1161 | IPR000642 | GO:0004176|GO:0004222|GO:0005524|GO:0006508 | |
Cma01g01734 | 1225 | Gene3D | Peptidase M41 | 976 | 1175 | IPR037219 | GO:0004176|GO:0004222|GO:0005524|GO:0006508 | |
Cma01g01734 | 1225 | MobiDBLite | consensus disorder prediction | 11 | 26 | - | - | |
Cma01g01734 | 1225 | CDD | AAA | 738 | 900 | - | - | |
Cma01g01734 | 1225 | Gene3D | Classic Zinc Finger | 49 | 149 | - | - | |
Cma01g01734 | 1225 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 51 | 73 | IPR013087 | - | |
Cma01g01734 | 1225 | MobiDBLite | consensus disorder prediction | 1170 | 1190 | - | - | |
Cma01g01734 | 1225 | Pfam | ATPase family associated with various cellular activities (AAA) | 771 | 900 | IPR003959 | GO:0005524|GO:0016887 | |
Cma01g01734 | 1225 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01734 | Cma-Chr1:11734296 | Cma02g01105 | Cma-Chr2:6566430 | 0 | dispersed | |
Cma01g01734 | Cma-Chr1:11734296 | Cma15g01035 | Cma-Chr15:6464753 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34360 | PF01434 | Peptidase_M41 | 8.20E-66 | CL0126 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g01734 | K08955 | - | csv:101209284 | 1142.87 |