Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01734 ATGATGAAGAAAGGAAATTTAACGGTGGAGGAACATTCGCCGCCGCCGCCACCGCCACCGTCGAAGAAGAAGCGGAATCTTCCCGGGAATCCAGACCCAGATGCTGAAGTGATAGCTTTGTCACCAAAAGCGCTTTTGACAACGAATAGATTCATATGTGAGATTTGCAACAAAGGGTTTCAAAGAGATCAAAATCTTCAACTTCATAGAAGAGGGCATAATCTTCCATGGAAGCTAAAACAAAGAAGCAATAAGGAAGTTAGGAAGAAGGTTTACGTGTGTCCCGAGCCGACTTGCGTGCACCATCACCCGTCGAGAGCCCTCGGCGATCTTACCGGAATCAAGAAGCATTTTTGTCGGAAGCACGGTGAGAAGAAATGGAAGTGTGAGAAATGTTCGAAGAGATATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAGATTTGTGGCACTCGAGAGTATAGATGTGATTGTGGAACCCTCTTTTCCAGGAGGGACAGTTTCATAACCCATAGAGCCTTTTGCGATGCGTTGGCTCAAGAGAGTACCAATTTTGCATCATCAGCCATGAACAATAGCAACCCAATTCAACCAATTTTCTCAACACTGCGCCAATTCCCACTCAAAACTGAAAACCAAGACCCTTTTTATCCTTCAACTTCCAACATCCTCAATCCCTTTAACCCTAACCCTACTTCGATCGGATTCGGGTTAGCCGGTCCTGGTTCGAGTCTTAATCCTGTGTTTGGTTCTGCATGGGAAATGAACTCTCCAAACATGATGGCTTTTGAAGAACCATCCTTTGAAGAAGCTCTAAATGGGATCTTGATGAATAATCGAGCTAATAAAGACGGCGACAAATGCAGCGGCGGTGGCAGTGGCGGTGGCGCGGAGGAGATAACGAGAGATTTATTGGGGTTGAGAGCTTTGGCTCGACAGCCCGATCAGCGTATGTTTGAGAATGAGATAGTAAACGACAATCTGAATTTGGGTTCTTCTTCTTCTTCCTCGATGTTTGGATTGCATCTGAATCATCAAACCCAGACTATGGCGAAACCACCCGTGCGACAAATCGTTTTAGTAAATGGGCTTTTTTGTTGCAAGAAAAGAACAGGCCCAATAAAAGAAACAAAAACCCAAATACGGCCCAAAGGCCCGATTATAGTACGGGCCGACTATTGGGCTGGGGGAAGGAGGAGGTTGTCGAAGCAAATTGCGGACGATAAGTCGTCTGGCTGTACATCGTTTAGGGCGAAACCATCAGTGCGACAAATCGTTTTAGTAAATGGGCTTTTTTGTTTGAAGAAAATAATAGGTCCAATAAAAGAAATAAAAGCCCAAATACGGCCCAAAGGCCCGATTATAGTACGGGCCGGCGGAAGGAGGAGGTCGGCGAAGCAAATTGATGGGGATGGGGAAAAATCTTGGAGCTTGGTGATATGCGACTTAGGATGTGTTTTTATGCTGCAGGTTTCGAGGAATAATTCGGAATTCGGACAGTTAAAGAATGCGTTGATTAATGCATATTATCCCGTCAATAAGGGCGGAGTTGGTGGTGGAGATGTCAATCGTCATGCGTGTGAAGTCAATCTTGCATGGTTTAAATCATCTGTATGTCTATTTTCTTATCCTCCTTCTTGCTCTGCAGTATATAAATTATTGACGTCTCAGAAGAGATATCAGTCCAGCTATGTCGGTAACCTAGCTCGAAGAGTGCGGGATGCAGATGAGGCCAGTGAAGTTGCTCATCTTAAAGAACTCTTCCGGCGAAACGATCCTGAAGCTGTCATAAGATTATTTGAAACTCAGCCATCGTTGCACCACAATGCTACTGCCCTTTCTGAATATGTTAAAGCATTGGTGAAAGTTGACCGGCTGGATGAAAGTGAACTACTTAAGACATTGCAGAGAGGCATTTTAAATGCATCTAGGGGAGAGGGAAGCATTGGTAGCATAGCGGCTTTCAGTAATGTTGGTAAACAGTCAAAAGACGGTATTCTTGGAACCTCAAGTGCTCCCATCCATATGGTGGCGTCTGAAGGGGGGCAATTTAAGGAGCAGCTCTGGCGTACAATTCGCACTATTGCACTAGCCTTTCTATTGATTTCTGGTGTAGGAGCACTGATTGAGGATAGAGGAATTAGCAAAGGTCTGGGTTTGAATGAAGAAGTGCAACCTAGCATGGAATCTAATACAAAATTCAATGATGTCAAGGGTGTGGATGAGGCTAAGGCAGAGCTTGAAGAAATTGTTCACTACCTTCGAGATCCCAAGCGGTTCACTCGTTTGGGCGGCAAACTTCCAAAAGGTGTTCTACTTGTTGGTCCACCTGGAACTGGCAAGACAATGTTAGCAAGAGCAATTGCTGGAGAAGCTGGAGTACCATTCTTTTCCTGCAGTGGCAGTGAGTTTGAAGAGATGTTTGTTGGTGTTGGGGCTAGAAGAGTGAGGGATTTATTTTCAGCTGCAAAGAAGAGGTCACCATGTATTATTTTCATTGACGAGATTGATGCCATTGGTGGAAGCCGTAATCCCAAGGACCAACAGTACATGAAAATGACTCTTAACCAGTTACTCGTTGAACTTGATGGTTTCAAGCAAAATGAAGGAATAATTGTCATTGCGGCAACCAACTTTCCAGAGTCTTTGGACAAGGCGTTAGTAAGACCGGGTCGATTTGATCGGCATATTGTTGTACCTAATCCAGATGTTGAAGGACGAAGGCAGATCCTGGAGTCACATATGTCCAAGATATTGAAGGCAGATGACGTCGATATGATGATCATTGCTAGAGGAACTCCTGGTTTTTCTGGTGCTGATCTTGCAAATTTAGTCAACATAGCTGCTTTAAAGGCTGCAATGGATGGTGCTAAAGCAGTGAGCATGGATGATCTGGAATTTGCAAAGGACAAGATTATGATGGGAAGTGAGCGCAAGTCTGCTGTCATTTCTGATGAGTCGCGAAAATTGACTGCATTCCATGAGGGTGGGCATGCCCTTGTGGCAATTCACACCGATGGAGCGCTCCCAGTTCATAAGGCCACAATTGTTCCAAGAGGAATGGCTCTTGGCATGGTTGCACAATTGCCTGATAAGGATGAGACTAGTGTCTCCCGGAAACAGATGCTTGCCCGTCTCGATGTTTGCATGGGAGGGCGAGTTGCAGAAGAGCTCATTTTTGGAGAAAATGAAGTTACTTCTGGTGCCTCATCTGATTTGCAACAAGCAACTTCTCTTGCTAGAGCTATGGTTACCAAGTATGGAATGAGCAAAGAAGTTGGGCTTGTCGCTCACAATTATGACGACAATGGGAAAAGCATGAGCACAGAAACAAGGCTTCTTATTGAAAAGGAAGTGAAGAACTTCTTAGGAGCGGCGTATGCCAATGCAAAAACAATTCTTACCACCCATAACAAGGAGCTCCATGCCCTTGCAAATGCTTTGCTCGAGCATGAAACACTCTCTGGTAGTCAGATCATGGCTCTTCTTGCACAAGTAAACTCTCAGCAGCAGCATCAACAACAACATCAACAATTAGTTTCCACTCAGAGTAGCTCACAGTCCAACCCTGTGCCACCCTCAGCACCAAACCCTGCTGCATCTGCGGCCGCTGCAGCCGCGGCCGCAGCGGCAACTGCTGCAGCCAAGGCGAAAGGCATTGCTCCTGTTGGATCTTAA 3678 45.41 MMKKGNLTVEEHSPPPPPPPSKKKRNLPGNPDPDAEVIALSPKALLTTNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVRKKVYVCPEPTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESTNFASSAMNNSNPIQPIFSTLRQFPLKTENQDPFYPSTSNILNPFNPNPTSIGFGLAGPGSSLNPVFGSAWEMNSPNMMAFEEPSFEEALNGILMNNRANKDGDKCSGGGSGGGAEEITRDLLGLRALARQPDQRMFENEIVNDNLNLGSSSSSSMFGLHLNHQTQTMAKPPVRQIVLVNGLFCCKKRTGPIKETKTQIRPKGPIIVRADYWAGGRRRLSKQIADDKSSGCTSFRAKPSVRQIVLVNGLFCLKKIIGPIKEIKAQIRPKGPIIVRAGGRRRSAKQIDGDGEKSWSLVICDLGCVFMLQVSRNNSEFGQLKNALINAYYPVNKGGVGGGDVNRHACEVNLAWFKSSVCLFSYPPSCSAVYKLLTSQKRYQSSYVGNLARRVRDADEASEVAHLKELFRRNDPEAVIRLFETQPSLHHNATALSEYVKALVKVDRLDESELLKTLQRGILNASRGEGSIGSIAAFSNVGKQSKDGILGTSSAPIHMVASEGGQFKEQLWRTIRTIALAFLLISGVGALIEDRGISKGLGLNEEVQPSMESNTKFNDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKILKADDVDMMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVSMDDLEFAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAIHTDGALPVHKATIVPRGMALGMVAQLPDKDETSVSRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLQQATSLARAMVTKYGMSKEVGLVAHNYDDNGKSMSTETRLLIEKEVKNFLGAAYANAKTILTTHNKELHALANALLEHETLSGSQIMALLAQVNSQQQHQQQHQQLVSTQSSSQSNPVPPSAPNPAASAAAAAAAAAATAAAKAKGIAPVGS 1225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11734296 11741213 + CmaCh01G017340.1 Cma01g01734 287427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01734 1225 ProSitePatterns AAA-protein family signature. 871 889 IPR003960 GO:0005524|GO:0016887
Cma01g01734 1225 Gene3D - 719 901 IPR027417 -
Cma01g01734 1225 SMART c2h2final6 127 147 IPR013087 -
Cma01g01734 1225 SMART c2h2final6 51 73 IPR013087 -
Cma01g01734 1225 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 4, MITOCHONDRIAL-LIKE 555 1200 - -
Cma01g01734 1225 MobiDBLite consensus disorder prediction 1170 1202 - -
Cma01g01734 1225 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Cma01g01734 1225 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 726 1163 IPR005936 GO:0004176|GO:0004222|GO:0016020
Cma01g01734 1225 Pfam AAA+ lid domain 923 966 IPR041569 -
Cma01g01734 1225 SUPERFAMILY beta-beta-alpha zinc fingers 50 147 IPR036236 -
Cma01g01734 1225 SMART AAA_5 767 903 IPR003593 -
Cma01g01734 1225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 731 987 IPR027417 -
Cma01g01734 1225 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 43 1194 IPR005936 GO:0004176|GO:0004222|GO:0016020
Cma01g01734 1225 SUPERFAMILY FtsH protease domain-like 982 1167 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cma01g01734 1225 Gene3D - 902 975 - -
Cma01g01734 1225 PANTHER METALLOPROTEASE M41 FTSH 555 1200 - -
Cma01g01734 1225 Pfam Peptidase family M41 982 1161 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cma01g01734 1225 Gene3D Peptidase M41 976 1175 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cma01g01734 1225 MobiDBLite consensus disorder prediction 11 26 - -
Cma01g01734 1225 CDD AAA 738 900 - -
Cma01g01734 1225 Gene3D Classic Zinc Finger 49 149 - -
Cma01g01734 1225 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 73 IPR013087 -
Cma01g01734 1225 MobiDBLite consensus disorder prediction 1170 1190 - -
Cma01g01734 1225 Pfam ATPase family associated with various cellular activities (AAA) 771 900 IPR003959 GO:0005524|GO:0016887
Cma01g01734 1225 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01734 Cma-Chr1:11734296 Cma02g01105 Cma-Chr2:6566430 0 dispersed
Cma01g01734 Cma-Chr1:11734296 Cma15g01035 Cma-Chr15:6464753 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34360 PF01434 Peptidase_M41 8.20E-66 CL0126 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01734 K08955 - csv:101209284 1142.87