Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01739 ATGTCGAAAATGAAGCATCTTCTTCGAAAGCTTCACATCGGTGGGGGACTTAATGAGCACCAGCGATTGAGCGATTCCCAACCCGCGACGCGACCCACTTCGACCCCATGCCCCAATAGTAATTCATCGGTGTCGCCTTCTTCTGGGTCCTCCTCCTCTGTGGCTATGCCGTCTTCCACTACAATGGAGGCCGTTGAATCGGTGGTTGATCGGACGGCTTCTGGCGATGTGGATGGTGGCTGCGTCGATTTCAATGCCTTGGAGGAAGAGTTTCAGATGCAATTGGCTATGGCGATTAGCGCTTCCGATCCTGATTCGAGACAAGACACTGAGTCCGCTCAGATCGATGCCGCTAAGCGGATGAGCCTTGGCTGTTCGCCTTCCATCTCCGGCAGTAAAGCCCTCGCTGAATTTCTCTCCCTACAGTATTGGAGCTATAATGTTGTAAATTATGATGAAAAAGTGATGGATGGATTTTATGACTTATATGGCATTACTGCGAACTCTAGCACCCGAGGAAAGATGCCACTGTTAGTGGATCTTAAACAAATATGTGTTACAGGTGATATTGATTATGAAGTGATTTTGGTGAACCGCTTGCTTGATCCTGAGCTTCAACAGTTGGAGAGACAAGCATATAACATATTCATGGATTGCGGAGTTTCTGAACATGGCTTCATTTTAAGTGGCCTGGTTCAAAAACTTGCTGATGTAGTTGTTGCTAGAATGGGTGGTCCTGTTGGGGACGCTGAAGAAATGTTGAGAAGGTGGACCCTCAGGAGTTATGAGTTGCGTAGTTCTTTGAACACGATTATTCTACCACTTGGACGCCTTGATATTGGACTTGCACGTCACAGAGCTTTGCTTTTTAAGGTGCTAGCTGATAGGATTAATCTTCCATGCATACTTGTCAAAGGAAGCTACTACACTGGTACTGATGATGGAGCTGTGAATATGATCAAAGTTGATAATGGAAGTGAATATATTATTGATCTTATGGGTGCTCCAGGCACACTAATTCCATCAGAGGCACCCAGCGGTCAATTTTCGAATTATGGCTTTGATAGGAGACCCGCAGATGTTATAGCAGTTCCTGAAGATACACCGGTATTAAAAAATGAAGGAGCTGAAGCTGTATTCATTTCATCTACTCAAGATGGAGTAGAAAATGTTTGCAACTTAGTATCCAAAGAAGCTTCAGATTTAGGTGTTCAATCAAAAGAAAACGGCAGAAACTTTATTGAAGAAATTCTAAATGGGAGTTCGGATTATGATTTTGAGAAGCTTCTAGAATCAGAAAGCAGTGCATTTGAAAGTTCATCAGGTGCATGTGCACAGTCGGCATCTGCACAAAAGAAGAAAGTTAAAAAGGTATCGAAGTATGTCATTAGTGCTGCAAAGAACCCAGAGTTTGCACAGAAATTACATGCTGTATTGTTAGAGAGTGGTGCATCACCTCCTGCAGATCTGTTTTCAGATATAGATTCACAGGGAAATGGTGAAAGGAAAGCGATTCACCAAATGTATCCGATCAACGGGAAAGGCATGGATGTTGGGTTTCAGTGCAACTCTTTTGTGTTGGCAAGCCAGGGACAGTCTTCTGCTGAAGCAGAGTATTTGAACAATATTGTCCATGAAAATAAGCAGAAAGCGTCTACTGTGGGATCAACGGAAGAACAAAAACCTGAGGCACATGCGAACAATCATGGTACTTTTTGGCCTCAGAGTATGAATGAGGGGTTTGTGTTTGTTGATGTTAATGGTGAAGCAGGAAAATTGGTTGATGTTAATGGGACTCTTCATCGTGAACATGTGGATGGTGTTTTGTTAACCTCTGTTGCCAATTCTCATAAAAAACAACTAGGAAGTACCTTAGTGGATGAAGAAAGAAGATGGTTGCAAGATAACCGTGAGAGTCGTGAGAGTCCATCAGAAAATTTGATAGAACTTGATGATAGTAACCTGCATGCTAGTGATGGCCACAGCGAGACGATCAACCCGATATTGGGCGAAGTTGCAGAATGGGAAATTCCTTGGGAGGATCTTCACATTGGTGAACGTATTGGTATAGGATCGTATGGCGAGGTTTATCGAGCAGATTGGAATGGGACTGAAGTTGCTGTGAAGAAGTTCTTAGACCAAGATTTTTCCGGTGCTGCTTTGGTCCAATTAAAATGTGAAGTTGAAATCATGTTAAGACTGAGGCATCCTAATGTTGTCCTTTTCATGGGAGCAGTCACTCGCCCTCCTCATTTCTCAATCCTCACAGAATTTCTTCCCAGGGGAAGTTTGTATAGGTTACTGCATCGTCCCAATTCTCAACTCGATGAAAGGAGGCGACTGAGAATGGCTTTCGATGTGGCCAAAGGAATGAACTACTTACACACAAGTCATCCAACTATTGTTCATAGAGATCTCAAGTCCCCCAATCTCCTCGTGGATAAAAACTGGGTTGTCAAGGTTTGTGATTTTGGGTTGTCACGTGTCAAGCAGAACACGTTTCTATCTTCAAAGTCAACTGCTGGAACGCCCGAATGGATGGCGCCAGAAGTTCTAAGGAATGAACCGGCCAATGAGAAGTGTGATGTGTATAGTTTCGGTGTGATCTTGTGGGAGTTGACAACATGTCGCATACCGTGGAAAGGTTTGAACCCAATGCAGGTTGTAGGAGCTGTAGGATTCCAGAATAGGCGCCTGGAAATCCCAGAAGATGTTGATCCAGCAGTAGCACAGATCATTTGCGATTGTTGGCAAACGGACACGCAACTGAGGCCGTCATTCTCTCAGCTTATTACTCGATTACGACGTCTTCAACGGCTTGTTCGGAAAACAAACTCTGGGAATCTAATATCGGAGTGA 2859 43.93 MSKMKHLLRKLHIGGGLNEHQRLSDSQPATRPTSTPCPNSNSSVSPSSGSSSSVAMPSSTTMEAVESVVDRTASGDVDGGCVDFNALEEEFQMQLAMAISASDPDSRQDTESAQIDAAKRMSLGCSPSISGSKALAEFLSLQYWSYNVVNYDEKVMDGFYDLYGITANSSTRGKMPLLVDLKQICVTGDIDYEVILVNRLLDPELQQLERQAYNIFMDCGVSEHGFILSGLVQKLADVVVARMGGPVGDAEEMLRRWTLRSYELRSSLNTIILPLGRLDIGLARHRALLFKVLADRINLPCILVKGSYYTGTDDGAVNMIKVDNGSEYIIDLMGAPGTLIPSEAPSGQFSNYGFDRRPADVIAVPEDTPVLKNEGAEAVFISSTQDGVENVCNLVSKEASDLGVQSKENGRNFIEEILNGSSDYDFEKLLESESSAFESSSGACAQSASAQKKKVKKVSKYVISAAKNPEFAQKLHAVLLESGASPPADLFSDIDSQGNGERKAIHQMYPINGKGMDVGFQCNSFVLASQGQSSAEAEYLNNIVHENKQKASTVGSTEEQKPEAHANNHGTFWPQSMNEGFVFVDVNGEAGKLVDVNGTLHREHVDGVLLTSVANSHKKQLGSTLVDEERRWLQDNRESRESPSENLIELDDSNLHASDGHSETINPILGEVAEWEIPWEDLHIGERIGIGSYGEVYRADWNGTEVAVKKFLDQDFSGAALVQLKCEVEIMLRLRHPNVVLFMGAVTRPPHFSILTEFLPRGSLYRLLHRPNSQLDERRRLRMAFDVAKGMNYLHTSHPTIVHRDLKSPNLLVDKNWVVKVCDFGLSRVKQNTFLSSKSTAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTCRIPWKGLNPMQVVGAVGFQNRRLEIPEDVDPAVAQIICDCWQTDTQLRPSFSQLITRLRRLQRLVRKTNSGNLISE 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11761896 11768912 + CmaCh01G017390.1 Cma01g01739 287432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01739 952 PANTHER SERINE-THREONINE PROTEIN KINASE 76 945 - -
Cma01g01739 952 MobiDBLite consensus disorder prediction 13 65 - -
Cma01g01739 952 CDD STKc_MAP3K-like 688 931 - -
Cma01g01739 952 ProSitePatterns Protein kinases ATP-binding region signature. 688 710 IPR017441 GO:0005524
Cma01g01739 952 Gene3D Transferase(Phosphotransferase) domain 1 761 947 - -
Cma01g01739 952 Pfam Protein tyrosine and serine/threonine kinase 682 934 IPR001245 GO:0004672|GO:0006468
Cma01g01739 952 Gene3D Phosphorylase Kinase; domain 1 675 759 - -
Cma01g01739 952 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 76 945 - -
Cma01g01739 952 ProSiteProfiles Protein kinase domain profile. 682 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01739 952 SUPERFAMILY Protein kinase-like (PK-like) 664 932 IPR011009 -
Cma01g01739 952 Pfam Ethylene-responsive protein kinase Le-CTR1 136 340 - -
Cma01g01739 952 PRINTS Tyrosine kinase catalytic domain signature 756 769 IPR001245 GO:0004672|GO:0006468
Cma01g01739 952 PRINTS Tyrosine kinase catalytic domain signature 795 813 IPR001245 GO:0004672|GO:0006468
Cma01g01739 952 PRINTS Tyrosine kinase catalytic domain signature 842 852 IPR001245 GO:0004672|GO:0006468
Cma01g01739 952 PRINTS Tyrosine kinase catalytic domain signature 861 883 IPR001245 GO:0004672|GO:0006468
Cma01g01739 952 PRINTS Tyrosine kinase catalytic domain signature 905 927 IPR001245 GO:0004672|GO:0006468
Cma01g01739 952 MobiDBLite consensus disorder prediction 20 65 - -
Cma01g01739 952 ProSitePatterns Serine/Threonine protein kinases active-site signature. 801 813 IPR008271 GO:0004672|GO:0006468
Cma01g01739 952 SMART serkin_6 682 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01739 Cma-Chr1:11761896 Cma11g00994 Cma-Chr11:5353144 6.20E-72 dispersed
Cma13g00997 Cma-Chr13:7710320 Cma01g01739 Cma-Chr1:11761896 4.01E-07 dispersed
Cma01g01739 Cma-Chr1:11761896 Cma09g00335 Cma-Chr9:1377586 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68301 PF07714 PK_Tyr_Ser-Thr 5.10E-65 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01739 K04424 - csv:101214554 1574.3