Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01741 ATGGTACCTGGAGAGTACTCTAAAATGATGCCGCAAGCGGTTTATAATGTTGAACTAGTCAGTTCTACGAAGAGCATAAAACATGAGTTATGGCCTCTAGATGCAATCGATCCAGTCCAAGCAAAGTTCCCATGCTGTTTGGTTTGGACCCCTCTTCCCGTTGTCTCTTGGTTGGCACCCTTCATTGGCCATGTTGGGATTTGCAGGGAGGATGGAGTCATATTGGATTTCGCAGGATCAAATTTTGTGAATACCAATGATTTTGCATTTGGCCCTGTTGCAAGATACCTTCAACTTGACAGAGAAAAATGTTGCTTCCCAACAAGCTTAGCTGCGCATAAATGTAAGCAGGGCTACCAGCATTCACAATTTGGAACAGCCATTACCTGGGATGATGGCCTACAATCAAGTAAGCGCTATCTCGAGCATAAATCCTACAACCTTTTCACATGTAACTGCCATTCCTTTGTCGCGAATTGTCTGAACCGCGCATGTTACGATGGATCGATGAGTTGGAACATGATAAATGTAGCAGCTCTAATTCTGTGGAAAGGGCATTGGGTTGATGGCATGTCAATTGTAAGATCATTCCTTCCCTTTGTACTGGTGGTCTGCATGGGCATTGCCATGGTTGGGTGGCCCTTCTTGATTGGTCTGTCTTTGCTTTCTCTCCTGTTGTTGACCGTTTACTTGTTTTCAATTGTGGCCATAATCGTGCGCTCTCGGCCCTTCTCTGGCCCCATTTTCTGCTGTTCCACTTTCTTCACTCGAATCATGTCGTCGAACGATGCGGAAACTGTTCGAAGGGATCGGATTCTCTCCAGCAAGCTGTATTTTGACGTTCCTTCTTCAAAGGTTCCGGTGATATATTCTTCATCGTACAACATCTCATTTCTTGGAATAGAAAAGTTGCATCCATTTGATTCGAAGAAATGGGGTCGCGTATGCCAATTCCTTGTTGCCGCTGGAGTAATAAGGAAAGATCAAATCATCGAGCCTTTGGAAGCTAAAATGAACGATCTTCTTGTGGTACATACTGAATCGTACCTGAATAGTTTGAAGAACAGTTTAAACGTTGCCAAGATTATTGAGGTCCCTCCTGTTGCGTTGTTTCCTCATTGTATTGTCAAGGAGAAAGTTGAACGTCCATTTCGTAACCAGGTTGGAGGGAGTATATTAGCTGCAAAAGTAGCAAAGGGGAGAGGATGGGCTATCAATGTAGGAGGTGGTTTTCACCATTGTTCAGCAGAACAAGGAGGGGGATTTTGTATGTATGCAGATATTACTCTGTGTATACACTACGCCTTTGTTCAGCTAAATATATCAAGTGTAATGATTATTGATCTTGATGCCCATCAAGGAAATGGCCATGAAAAGGATTTTTCCCATGATAGCCGAGTATATATTCTTGATATGTTCAATCCAGAAATATATCCATTTGATTACGAGGCTAGGCGATGCATTAATCAGAAAGTTGAAGTCGTTAGTGGGACCACAACAAGTGAATACTTGAAGAAATTGGAAGAAGCACTTGAGGTTGCTTCCACTTCCTATGATCCAGAATTAATTGTTTACAATGCTGGGACTGATATTCTAGATGGAGATCCTCTGGGTTTGTTGAAGATTAGTGCTGATGGAATAGCTAGGAGAGATGAGAAGGTTTTCAGATTTGCTCGTGCGAGGAGAATTCCCATTGTAATGCTAACATCAGGCGGTTACATGAAATCTAGTGCTAAAGTCATTGCTGATTCAATCGAAAATCTCTCGAAGCAAAATTTAATCGATACAGGAAGCACTCCAGGCAGAATGTTAAAGTGTGAGAAATCCCGCAAAGAGGAGCTGCTGCTACCTCAAAGATTTAAACGTTTATTAAACACAAAATTGAATGTTCGGTCTCTTCCTTACAGAAAGAGAAGACTATATAATAGAGAAATACATGTAAACTTCATATGGTTTGTAATGGCAATGGAGAAAACGTCGCCGTTGCAGGGCTTAGAGGCAGAGGAATTTCAAGAACTTGAACCTCTCATTCAAAGTTACCACAAATTTGAGGCTTCTCCCAACACAACCACTTCCCTTATTACCCAACGCATCGACGCTCCTCTCCACGCCGTGTGGCCCTTCGTTCGGAGCTTCGATAATCCTCAGAAGTACAAACACTTCGTCAAAAGCTGCAATATGTCAGCTGGCGACGGCGGGGTCGGCAGTATCAGAGAGGTGACGGTGGTCTCCGGCCTGCCGGCGTCCACCAGCACGGAGAGGCTAGAGATTTTGGACGAGGAGAAGCATATTTTGAGCTTCAGGGTGGTCGGAGGTGAGCACCGGCTGAACAATTACCGATCAGTGACGTCGGTGAACGAGTTCAACAAAGACGGCAAAATTTACACCGTGGTTTTGGAGTCTTACATCGTCGACATACCGGAGGGGAACACCGGCGAGGACACCAAAATGTTTGTCGACACTGTCATTAAGTTGAATCTTCAAAAACTTGCTGGGGCTGCCATCGCCTCTCTGCATGGACATGAATAG 2529 44.01 MVPGEYSKMMPQAVYNVELVSSTKSIKHELWPLDAIDPVQAKFPCCLVWTPLPVVSWLAPFIGHVGICREDGVILDFAGSNFVNTNDFAFGPVARYLQLDREKCCFPTSLAAHKCKQGYQHSQFGTAITWDDGLQSSKRYLEHKSYNLFTCNCHSFVANCLNRACYDGSMSWNMINVAALILWKGHWVDGMSIVRSFLPFVLVVCMGIAMVGWPFLIGLSLLSLLLLTVYLFSIVAIIVRSRPFSGPIFCCSTFFTRIMSSNDAETVRRDRILSSKLYFDVPSSKVPVIYSSSYNISFLGIEKLHPFDSKKWGRVCQFLVAAGVIRKDQIIEPLEAKMNDLLVVHTESYLNSLKNSLNVAKIIEVPPVALFPHCIVKEKVERPFRNQVGGSILAAKVAKGRGWAINVGGGFHHCSAEQGGGFCMYADITLCIHYAFVQLNISSVMIIDLDAHQGNGHEKDFSHDSRVYILDMFNPEIYPFDYEARRCINQKVEVVSGTTTSEYLKKLEEALEVASTSYDPELIVYNAGTDILDGDPLGLLKISADGIARRDEKVFRFARARRIPIVMLTSGGYMKSSAKVIADSIENLSKQNLIDTGSTPGRMLKCEKSRKEELLLPQRFKRLLNTKLNVRSLPYRKRRLYNREIHVNFIWFVMAMEKTSPLQGLEAEEFQELEPLIQSYHKFEASPNTTTSLITQRIDAPLHAVWPFVRSFDNPQKYKHFVKSCNMSAGDGGVGSIREVTVVSGLPASTSTERLEILDEEKHILSFRVVGGEHRLNNYRSVTSVNEFNKDGKIYTVVLESYIVDIPEGNTGEDTKMFVDTVIKLNLQKLAGAAIASLHGHE 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11772069 11780861 + CmaCh01G017410.1 Cma01g01741 287434

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01741 842 CDD PYR_PYL_RCAR_like 691 834 - -
Cma01g01741 842 Pfam Histone deacetylase domain 305 582 IPR023801 -
Cma01g01741 842 SUPERFAMILY Arginase/deacetylase 283 584 IPR023696 -
Cma01g01741 842 PANTHER HISTONE DEACETYLASE 11 260 598 - -
Cma01g01741 842 SUPERFAMILY Bet v1-like 691 836 - -
Cma01g01741 842 CDD HDAC_classIV 305 588 IPR044150 GO:0004407|GO:0016575
Cma01g01741 842 PRINTS Histone deacetylase superfamily signature 520 530 IPR000286 -
Cma01g01741 842 PRINTS Histone deacetylase superfamily signature 409 432 IPR000286 -
Cma01g01741 842 PRINTS Histone deacetylase superfamily signature 443 458 IPR000286 -
Cma01g01741 842 Pfam Polyketide cyclase / dehydrase and lipid transport 695 831 IPR019587 -
Cma01g01741 842 Pfam Protein of unknown function (DUF778) 102 187 IPR008496 -
Cma01g01741 842 Pfam Protein of unknown function (DUF778) 52 101 IPR008496 -
Cma01g01741 842 Gene3D Histone deacetylase domain 284 626 IPR037138 -
Cma01g01741 842 PANTHER HISTONE DEACETYLASE 11 260 598 - -
Cma01g01741 842 Gene3D - 653 842 IPR023393 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01741 K11418 HDAC11; histone deacetylase 11 [EC:3.5.1.98] - csv:101207492 625.165
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01741 Cma09g00331 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01741 Cma-Chr1:11772069 Cma16g00639 Cma-Chr16:3302128 4.01E-63 dispersed
Cma09g00333 Cma-Chr9:1372949 Cma01g01741 Cma-Chr1:11772069 3.17E-144 transposed
Cma01g01741 Cma-Chr1:11772069 Cma09g00331 Cma-Chr9:1368135 5.38E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g69 Blo01g01471 . Bda01g00614 . . Bpe02g00483 . Bma01g02218 . . Cma01g01741 . Car09g00280 . . . Cpe06g00236 . . . . . . . Cla05g01824 Cam05g1946 Cec05g1959 . Clacu05g1938 Cmu05g1819 . Cone4ag1655 Cone7ag1296 Cone17ag0922 Cone20ag0265 Lsi04g01433 . . . . . . . . . . . Sed13g1853 Cmo01g01771 Cmo09g00331 Cma09g00331 . Car01g01353 . . . Bhi09g03166 Tan01g4639 Cmetu07g0839 . Hepe01g1873 . . . . . . . . . . . . Cme07g00232
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009853 1 5 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01741 Cma_Chr01 FPKM 12.849909 11.538097 20.349047 22.275326 8.981673 10.20715 10.913048 16.474072 17.324625 19.277584