Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01742 ATGAATGAAAGCCGATCGAAGCTCCTATTAGTTCCGAACCAACTAGACCCTTATGCATTGATGCTATCGGAATCGATCGAACGATTTTTCGATGAATATCGAAAAGGGGTTACTGATTTCTCAAGCTTCGTTCCGATTTTCTCTCGTTTGTTGGGAAATTTGGCCGACCCGCCGGTGGCAGTTGTGTGGTTTTACTCTGCTATGACGTTTCACACGGCTAAATCCGCAGCTCGAAATTCTTCGGAGAAATTGCTGGCAGTTAAGGATTTATTCCATCTACTCGTTTCTTGCACGGCGTCGTCCTGTGCATCGAAAAGAATTGCGGTGCTGGCTCCGGTTATTTACTCTCTCTTTGATTTAGTTGTTGAGAATAAAACGTTGAAGGAGGAAGCTGAGAATTTGATCGATGGAGTTGTTAGCTATATCGGTATTTGTTGTGGTCAAGAGTCCGAGGACGGCGATTGTTTGTTGGGATTTGGTTCTTATTTTCTGGATTTAGCTCGAGTCTGGATGGTTGACAAACCTGGAGAAGATTTGAGGGGTTTTCTCCCGCTTGTTAGCCATGAAATTTGTGAAGGCATCGGTGTCAACGGCGGGGTGGGCTACTTTTCTGGGATAGTTATGTTTCAAGCCTTTTTGTTGAGGCTGTGCTTGAAATTTGCCTCTCGAATGTCAATGGTAGAGCTGCAAAATGAACTGCACAGCCGGGCGGTTCAAATGATTGCTGGGTTTCGTAGCTGTCACTTCTATGATACTTTCCTCAGGATGCTACTGCAGTCAGTTTTGCCGACCACCTATTTGTTGGGTTCTGCAGATGAAGTTCTTCTGCGAGAAGTGTTATATGACGCTGCAATAATACCAGATTACCCATTCATTAAACTTCAATTTGGAACTGAACGACCTGCTTTGGATTTAAGAACTATTTGTTTGAATTGGCTATTTGTTGCTGAAAATGGCATTCGAACCTTTAGAGAAACTGGTAATCTGAGAAAGGCTATGTCCTACATAAATGCCTTCCGCAATTCTTGTTGGCCCTCTCAGTTGATCAATTGGGTCAGAAACCAACCAGGCTTCAGTGAGAGGATGAGTCAACCAAACATCTCCACACCCACTGCTCTCATCGAGTGGCTTCTGGTATTGGAAAATCAAGGGGTGAGAGTGTTCGACCATTTGAACTCCAAGTTCAGAGCCAGAGAAATCACTTGCAAATCAGGAGCTGAGTTTGTAGAAGCAGCAACAAAGGTTCCGGATGTCAGAAATGTAATGGATGAAGATGACTCCGTTGGTGACTTTGACATGGTTGATTCAGTGGCTTTAGCAGCAGCACAGGGAACATACATGAGCTTGGATACAAACGGCAATGAAAATGGAAGAAAGAGGAAAGAATGCATGAATGACAAAGGAGACACGAGGGTAAAGTTCCTTAGGAAACATCTCCACGACAATCCACTTAGGGAGAAATCTTTGCCATTAGTTTGA 1479 43.88 MNESRSKLLLVPNQLDPYALMLSESIERFFDEYRKGVTDFSSFVPIFSRLLGNLADPPVAVVWFYSAMTFHTAKSAARNSSEKLLAVKDLFHLLVSCTASSCASKRIAVLAPVIYSLFDLVVENKTLKEEAENLIDGVVSYIGICCGQESEDGDCLLGFGSYFLDLARVWMVDKPGEDLRGFLPLVSHEICEGIGVNGGVGYFSGIVMFQAFLLRLCLKFASRMSMVELQNELHSRAVQMIAGFRSCHFYDTFLRMLLQSVLPTTYLLGSADEVLLREVLYDAAIIPDYPFIKLQFGTERPALDLRTICLNWLFVAENGIRTFRETGNLRKAMSYINAFRNSCWPSQLINWVRNQPGFSERMSQPNISTPTALIEWLLVLENQGVRVFDHLNSKFRAREITCKSGAEFVEAATKVPDVRNVMDEDDSVGDFDMVDSVALAAAQGTYMSLDTNGNENGRKRKECMNDKGDTRVKFLRKHLHDNPLREKSLPLV 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11782071 11786053 - CmaCh01G017420.1 Cma01g01742 287435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01742 492 PANTHER OS01G0600300 PROTEIN 12 491 - -
Cma01g01742 492 PANTHER SNF2 DOMAIN PROTEIN 12 491 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01742 - - - csv:101207241 844.343
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01742 Cma09g00330 CCT
Cma01g01742 Cma09g00330 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01742 Cma-Chr1:11782071 Cma10g00705 Cma-Chr10:3167067 7.08E-67 wgd
Cma01g01742 Cma-Chr1:11782071 Cma09g00330 Cma-Chr9:1363986 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g65 . . . . . . . . . . Cma01g01742 . Car09g00279 . . . Cpe06g00235 . . . . . . . Cla05g01823 Cam05g1945 Cec05g1958 Cco05g2018 Clacu05g1937 Cmu05g1818 Cre05g1944 . . . . Lsi04g01434 . . . . . . . . . . . Sed11g1840 Cmo01g01770 . Cma09g00330 . Car01g01354 . . Cpe02g00255 Bhi09g03168 Tan01g4641 Cmetu02g0525 . Hepe01g1872 Mch11g0406 . . . . . . . . . . . Cme07g00233
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010802 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 3 1 0 2 1 1 1 1 1 1 1 1 2 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01742 Cma_Chr01 FPKM 2.049282 2.143284 0.92587 1.435237 4.578358 4.019924 5.594034 1.100085 1.071344 1.289085