Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01746 ATGGGAATCTGCATATCCGCTGCATCTTCTCAGATTCGCCATGAAACTAAAGTTACGGCGATTTGTACAACAAACGAGCTCGGTTTTGAAGAACAGAGACCCGATTCCGTGTGTTCCAAGCAAGGCAACAAAGGGATCAATCAAGATGCTGCCTTTGTCTATCAGGAGTACGGCGAACAGGGCAGGGCTCTGTTCGGAGTGTTCGATGGGCATGGAACAAATGGCCATACCGTCAGCAACATGGCGAAGAATAGACTGCCGCCGCTGTTGCTAAGCGCTATGTCAAAAGCTGAGACTAATTTTGTTGGGTGGAAAGAAGCTATGGTCACTGCTTTCAAGGTGATGGACAAAGAGATCAAACTTCAAGAGACTTTGGACTGTTCTTTCAGTGGAACCACCGCTGTTATCATTCTCAAACAGGGAGAAGATTTGGTGATTGCGAACTTGGGGGATTCGAGGGCTGTGATGGGGAGGGTGACCGACGATGACATCGAGGCCGTTCAATTAACGACTGATTTGAAGCCTGGTTTGCCGGACGAAGCTGAGCGGATAAGGAATTGTAATGGGAGAGTGTTGGCTTTACAAGAAGAGCCGCATATACAGAGAGTGTGGCTGCCGAACGAGGACGCGCCGGGGCTGGCCATGTCCAGAGCTTTTGGGGACTTCGCTCTTAAAGAACATGGCATTATTGCTCTTCCCGATGTCTCCCACCGCCGTCTCGCTCCCGACGACCACTTCATCGTGCTCGCCACTGATGGGATTTGGGACGTGCTGAGCAACAACGAAGTAGCGTCGATCGTGTCGAAAGCAGAGAGCGAAGAAGCGGCGGCGAAAGCGGTGGTGGAGGCGGCGACTGAGGCTTGGAAACGCTACCCAGCTTCCAAACTCGACGACTGCACCGTCGTGTGCCACTTTTTACAAAACAAACGCCAGTGGGAAAATTGA 945 51.53 MGICISAASSQIRHETKVTAICTTNELGFEEQRPDSVCSKQGNKGINQDAAFVYQEYGEQGRALFGVFDGHGTNGHTVSNMAKNRLPPLLLSAMSKAETNFVGWKEAMVTAFKVMDKEIKLQETLDCSFSGTTAVIILKQGEDLVIANLGDSRAVMGRVTDDDIEAVQLTTDLKPGLPDEAERIRNCNGRVLALQEEPHIQRVWLPNEDAPGLAMSRAFGDFALKEHGIIALPDVSHRRLAPDDHFIVLATDGIWDVLSNNEVASIVSKAESEEAAAKAVVEAATEAWKRYPASKLDDCTVVCHFLQNKRQWEN 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11798990 11800492 + CmaCh01G017460.1 Cma01g01746 287439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01746 314 SMART PP2C_4 24 304 IPR001932 -
Cma01g01746 314 CDD PP2Cc 36 303 IPR001932 -
Cma01g01746 314 Gene3D - 30 309 IPR036457 -
Cma01g01746 314 PANTHER PROTEIN PHOSPHATASE 2C 72-RELATED 1 311 - -
Cma01g01746 314 SUPERFAMILY PP2C-like 36 308 IPR036457 -
Cma01g01746 314 ProSiteProfiles PPM-type phosphatase domain profile. 34 306 IPR001932 -
Cma01g01746 314 Pfam Protein phosphatase 2C 38 284 IPR001932 -
Cma01g01746 314 PANTHER ALPHABET, ISOFORM E-RELATED 1 311 - -
Cma01g01746 314 ProSitePatterns PPM-type phosphatase domain signature. 64 72 IPR000222 GO:0043169
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01746 Cma-Chr1:11798990 Cma01g00483 Cma-Chr1:2450184 7.22E-96 dispersed
Cma17g00286 Cma-Chr17:1524974 Cma01g01746 Cma-Chr1:11798990 2.29E-31 dispersed
Cma01g01746 Cma-Chr1:11798990 Cma05g00869 Cma-Chr5:6071902 9.38E-100 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01746 - - csv:101214070 392.119