Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01748 TCATTTAAACGCCTGATGGAAAGGGATCCTCCGAGAAGCAATAATAACAGTAACGGCACCGCCTATAATAAAGTGGACATTTCGGGTAGAAGCGGCAGCGGAGGAGCTGAAGGGTCGTTGCTACTGAGATCCAGTTGCAATGCTACAAGACAGGCCGCCGCCGCTACCGCACCATCGGACTTCCTTTTGCAGTGGGGAAACCGGAAGCGGCTTAGATGCATGAAGGTCCAAGGAAGAGACAAAAACGACCCGACCGCTCCGGCTCATAGGACCACCGCCCGAATCGACCGGCGAGTGGTGAGAGCCGACAAAGACTCCCCGAACCGGACCACCATCACCCATTCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTAATCATAACAGCAGCAGCAATGGGTATTTGAATCTTCGGCAAAGAGGATCCTCCCCGCAGCTCCCACCTCCTTATCAGCGCATTCTCAGGAACTCGGAGACGACGGGGGCGATGAGAGGGCACGGCAACGGCGGGGTCCGGGGAATTGCCTCTCCGGACAGAGGGGCGCACGATAGAAGAGGAAACAGCAACCACCACCATCATCACCACTCTAACAACAACAACAACAATCATCACCATAATGATAATAACAACAAATCCGCGGCTACATCGGACACGGCGTACGATAGCAAAAAGGGTGGGTCTTCGTCCGGTGGCAGTGGGGAGGCCGGTTTGCCCCAAGTGTGGCCGCCAAAATTCGCGATTGCTTTGACGAACAAGGAAAAAGAAGAGGATTTCTTGGTCATCAAGGGCTCCAAGTTGCCACAGAGACCCAAGAAACGTGCCAAGATTATCCAACGCACCGTCAACTGTACGGTATTTCCAGGTCGGCTGCTGTGCTGTTTGTGTGTATCACTCCCCCTTGTCTTCTCCGCATTCTCAACGGTTGTTGTTTCTGAGGCTGGTGAGCCCGGGAGCATGGCTATCCGATCTCACTCTGGAGCGCTACGAAGTTCGAGAGAAGAAGATTTCAAAGAAGAGACCGAGAGGGTTGAAGGCAATGGGCAACATGGAGTCGGATTCGGAGTGAGTTTGAGCGTGTGTTAG 1083 54.02 SFKRLMERDPPRSNNNSNGTAYNKVDISGRSGSGGAEGSLLLRSSCNATRQAAAATAPSDFLLQWGNRKRLRCMKVQGRDKNDPTAPAHRTTARIDRRVVRADKDSPNRTTITHSPAAAAAAAAANHNSSSNGYLNLRQRGSSPQLPPPYQRILRNSETTGAMRGHGNGGVRGIASPDRGAHDRRGNSNHHHHHHSNNNNNNHHHNDNNNKSAATSDTAYDSKKGGSSSGGSGEAGLPQVWPPKFAIALTNKEKEEDFLVIKGSKLPQRPKKRAKIIQRTVNCTVFPGRLLCCLCVSLPLVFSAFSTVVVSEAGEPGSMAIRSHSGALRSSREEDFKEETERVEGNGQHGVGFGVSLSVC 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11802994 11805522 + CmaCh01G017480.1 Cma01g01748 287441

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01748 360 MobiDBLite consensus disorder prediction 324 349 - -
Cma01g01748 360 Pfam Protein of unknown function (DUF1639) 249 294 IPR012438 -
Cma01g01748 360 MobiDBLite consensus disorder prediction 1 30 - -
Cma01g01748 360 PANTHER PUTATIVE (DUF1639)-RELATED 7 295 - -
Cma01g01748 360 MobiDBLite consensus disorder prediction 122 237 - -
Cma01g01748 360 PANTHER INTEGRATOR COMPLEX SUBUNIT 6 HOMOLOG 7 295 - -
Cma01g01748 360 MobiDBLite consensus disorder prediction 202 234 - -
Cma01g01748 360 MobiDBLite consensus disorder prediction 11 27 - -
Cma01g01748 360 MobiDBLite consensus disorder prediction 124 163 - -
Cma01g01748 360 MobiDBLite consensus disorder prediction 327 345 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01748 - - - mcha:111011045 389.423
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01748 Cma09g00328 CCT
Cma01g01748 Cma12g00627 CCT
Cma01g01748 Cma05g00106 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01748 Cma-Chr1:11802994 Cma10g01043 Cma-Chr10:5783758 1.20E-15 dispersed
Cma01g01748 Cma-Chr1:11802994 Cma12g00627 Cma-Chr12:3327823 1.88E-22 wgd
Cma01g01748 Cma-Chr1:11802994 Cma05g00106 Cma-Chr5:456538 6.40E-54 wgd
Cma01g01748 Cma-Chr1:11802994 Cma09g00328 Cma-Chr9:1350511 1.10E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g52 Blo01g01476 Blo12g01007 Bda01g00610 Bda03g00150 . . . Bma01g02222 Cmo05g00112 Cmo12g00568 Cma01g01748 Cma05g00106 Car09g00277 Car12g00575 Sed08g1756 Cpe07g00548 Cpe06g00233 Bhi04g00489 Tan02g1657 Cmetu03g1033 . Hepe08g1378 . Lcy13g2173 Cla05g01816 Cam05g1940 Cec05g1953 . Clacu05g1932 Cmu05g1813 Cre05g1939 Cone4ag1648 . Cone17ag0915 Cone20ag0257 Lsi04g01438 . . . . . . . . Bpe04g00133 . . Sed11g1844 Cmo01g01761 Cmo09g00326 Cma09g00328 Cma12g00627 Car01g01360 Car05g00092 Cpe11g00086 Cpe02g00250 Bhi09g03175 Tan01g4647 Cmetu07g1833 . . . . . . . . . . . Lsi08g01570 Csa02g01850 Chy03g01633 Cme07g00240
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002182 2 3 1 1 1 2 3 1 2 2 2 1 3 2 2 3 1 3 3 2 2 2 2 2 2 3 2 6 2 1 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01748 Cma_Chr01 FPKM 17.881794 19.885145 8.642035 10.096663 13.363021 10.860328 13.695379 11.532084 12.125093 11.863138