Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g01756 | ATGTCAATTAGTTTCTTAGCTTCTCAGCATTATAATGGTGATTTGCTTTCTCCCTTGTCTGTAATGCCACTCAAGTTAGATGGATCTCTTTGTTTCATGGAGTCACTCAGCACATTACAACCTCAAGAAATGTTGCCAAATATCTCACCAAAGTTTGAGGACTTTCTTGGTAGTGCAAATCATGGAAGAGAGGCCACAGCTTTGAGCTTAGACAGCATATACTACAATCAAAATGATGGTGCTGATGCTGTCTCAGAGAGGCAACATTGTTTGAATCTTTTTAAGCAACAAGAGCAACATATTCTTTTTGGAATGTTCCAGTTTCCAGCTGAGGATGCCAACAAGGAGTCTCATATTGCAAGCCATAGCTATGAAATTCGACACGCTCTGGAGCAGCGTATCTATCGGATGAGTAGCCAAGACATAGAGCCGCTTAGCTTGTCAATGAGTCCTCGTTCTCATTCTAGTTGTGTTACCGCCACCATGGAAACAAAGAAAAGGGGTTTGCTTGGTCGAAAGAAGCCGGTGCACCGGAAGTCGATCGACTCGTTCGGACAAAGAACATCACAGTACAGAGGTGTTTCAAGACATAGATGGACTGGTAGATATGAGGCTCATTTGTGGGATAAAAGTTGTAAGAAGGAAGGCCAAACCAGGAAAGGAAGACAAGTTTATCTTGGTGGCTATGATATGGAGGAGAAAGCAGCAAGAGCTTATGATCTTGCAGCTCTCAAGTACTGGGGACCCTCCACGCATTTAAACTTCCCGTTAAAGAATTATCAAGTTGAAATTGAAGAAATGAAGAACATGAACCGCCAAGAATATGTCGCCCATCTGAGAAGGAAAAGCAGTGGATTCTCCAGGGGAGCTTCAATATACAGAGGAGTAACTAGACATCATCAGCATGGGAGATGGCAAGCTCGGATCGGAAGAGTCGCCGGGAATAAAGACCTCTATCTTGGAACATTTGGCACACAAGAGGAAGCAGCTGAAGCATATGACATAGCAGCCATCAAGTTCCGTGGCACAAACGCGGTTACAAACTTCGACACTTCAAGATACAACGTAGAAAGGATCATGGCGAGCAGTAGCCTTTTTTCAAGAGAAATAGCAAGACGAAACAAAGAGCAAAAACTAACCAACGCAATCGAGTGCAAAGAACCGACACAAAACATCGATCGAATCGACCCCTCGGAGATATCCAACAGCAACAACGTAGTTTGGAGGTCGGCATTCGACGACACGATGTTGCTGGATCGAAACACAACCATTGAATCCATAGACCGAAAGTTGGTAACATCCTGTGGTTACCTAAACCATCTAATGGGAGTGGAAACGGCAATGGTGAAGGATTCAAGGAAGTTCAAGGCACATTTCTCCAATGCTTCAGTTTCTTTGCCTGTTATGTCAAGTGTTTGGAATGATGTCTGA | 1431 | 43.75 | MSISFLASQHYNGDLLSPLSVMPLKLDGSLCFMESLSTLQPQEMLPNISPKFEDFLGSANHGREATALSLDSIYYNQNDGADAVSERQHCLNLFKQQEQHILFGMFQFPAEDANKESHIASHSYEIRHALEQRIYRMSSQDIEPLSLSMSPRSHSSCVTATMETKKRGLLGRKKPVHRKSIDSFGQRTSQYRGVSRHRWTGRYEAHLWDKSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHLNFPLKNYQVEIEEMKNMNRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGTNAVTNFDTSRYNVERIMASSSLFSREIARRNKEQKLTNAIECKEPTQNIDRIDPSEISNSNNVVWRSAFDDTMLLDRNTTIESIDRKLVTSCGYLNHLMGVETAMVKDSRKFKAHFSNASVSLPVMSSVWNDV | 476 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11818737 | 11821213 | + | CmaCh01G017560.1 | Cma01g01756 | 287449 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g01756 | 476 | CDD | AP2 | 189 | 256 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01756 | 476 | PRINTS | Ethylene responsive element binding protein signature | 191 | 202 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01756 | 476 | PRINTS | Ethylene responsive element binding protein signature | 332 | 352 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01756 | 476 | Gene3D | AP2/ERF domain | 189 | 258 | IPR036955 | GO:0003700|GO:0006355 | |
Cma01g01756 | 476 | Gene3D | AP2/ERF domain | 292 | 352 | IPR036955 | GO:0003700|GO:0006355 | |
Cma01g01756 | 476 | SUPERFAMILY | DNA-binding domain | 291 | 351 | IPR016177 | GO:0003677 | |
Cma01g01756 | 476 | ProSiteProfiles | AP2/ERF domain profile. | 292 | 350 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01756 | 476 | ProSiteProfiles | AP2/ERF domain profile. | 190 | 256 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01756 | 476 | Pfam | AP2 domain | 190 | 248 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01756 | 476 | Pfam | AP2 domain | 292 | 342 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01756 | 476 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 10 | 105 | - | - | |
Cma01g01756 | 476 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 132 | 472 | - | - | |
Cma01g01756 | 476 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT | 10 | 105 | - | - | |
Cma01g01756 | 476 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT | 132 | 472 | - | - | |
Cma01g01756 | 476 | SUPERFAMILY | DNA-binding domain | 189 | 257 | IPR016177 | GO:0003677 | |
Cma01g01756 | 476 | CDD | AP2 | 291 | 352 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01756 | 476 | SMART | rav1_2 | 190 | 262 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01756 | 476 | SMART | rav1_2 | 292 | 356 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01756 | Cma-Chr1:11818737 | Cma03g00890 | Cma-Chr3:6544296 | 1.08E-159 | dispersed | |
Cma17g00910 | Cma-Chr17:6863250 | Cma01g01756 | Cma-Chr1:11818737 | 5.36E-10 | dispersed | |
Cma01g01756 | Cma-Chr1:11818737 | Cma12g00614 | Cma-Chr12:3226740 | 6.80E-156 | wgd | |
Cma01g01756 | Cma-Chr1:11818737 | Cma09g00308 | Cma-Chr9:1272511 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34361 | PF00847 | AP2 | 1.60E-13 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g01756 | K09285 | - | csv:101212143 | 656.751 |