Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01756 ATGTCAATTAGTTTCTTAGCTTCTCAGCATTATAATGGTGATTTGCTTTCTCCCTTGTCTGTAATGCCACTCAAGTTAGATGGATCTCTTTGTTTCATGGAGTCACTCAGCACATTACAACCTCAAGAAATGTTGCCAAATATCTCACCAAAGTTTGAGGACTTTCTTGGTAGTGCAAATCATGGAAGAGAGGCCACAGCTTTGAGCTTAGACAGCATATACTACAATCAAAATGATGGTGCTGATGCTGTCTCAGAGAGGCAACATTGTTTGAATCTTTTTAAGCAACAAGAGCAACATATTCTTTTTGGAATGTTCCAGTTTCCAGCTGAGGATGCCAACAAGGAGTCTCATATTGCAAGCCATAGCTATGAAATTCGACACGCTCTGGAGCAGCGTATCTATCGGATGAGTAGCCAAGACATAGAGCCGCTTAGCTTGTCAATGAGTCCTCGTTCTCATTCTAGTTGTGTTACCGCCACCATGGAAACAAAGAAAAGGGGTTTGCTTGGTCGAAAGAAGCCGGTGCACCGGAAGTCGATCGACTCGTTCGGACAAAGAACATCACAGTACAGAGGTGTTTCAAGACATAGATGGACTGGTAGATATGAGGCTCATTTGTGGGATAAAAGTTGTAAGAAGGAAGGCCAAACCAGGAAAGGAAGACAAGTTTATCTTGGTGGCTATGATATGGAGGAGAAAGCAGCAAGAGCTTATGATCTTGCAGCTCTCAAGTACTGGGGACCCTCCACGCATTTAAACTTCCCGTTAAAGAATTATCAAGTTGAAATTGAAGAAATGAAGAACATGAACCGCCAAGAATATGTCGCCCATCTGAGAAGGAAAAGCAGTGGATTCTCCAGGGGAGCTTCAATATACAGAGGAGTAACTAGACATCATCAGCATGGGAGATGGCAAGCTCGGATCGGAAGAGTCGCCGGGAATAAAGACCTCTATCTTGGAACATTTGGCACACAAGAGGAAGCAGCTGAAGCATATGACATAGCAGCCATCAAGTTCCGTGGCACAAACGCGGTTACAAACTTCGACACTTCAAGATACAACGTAGAAAGGATCATGGCGAGCAGTAGCCTTTTTTCAAGAGAAATAGCAAGACGAAACAAAGAGCAAAAACTAACCAACGCAATCGAGTGCAAAGAACCGACACAAAACATCGATCGAATCGACCCCTCGGAGATATCCAACAGCAACAACGTAGTTTGGAGGTCGGCATTCGACGACACGATGTTGCTGGATCGAAACACAACCATTGAATCCATAGACCGAAAGTTGGTAACATCCTGTGGTTACCTAAACCATCTAATGGGAGTGGAAACGGCAATGGTGAAGGATTCAAGGAAGTTCAAGGCACATTTCTCCAATGCTTCAGTTTCTTTGCCTGTTATGTCAAGTGTTTGGAATGATGTCTGA 1431 43.75 MSISFLASQHYNGDLLSPLSVMPLKLDGSLCFMESLSTLQPQEMLPNISPKFEDFLGSANHGREATALSLDSIYYNQNDGADAVSERQHCLNLFKQQEQHILFGMFQFPAEDANKESHIASHSYEIRHALEQRIYRMSSQDIEPLSLSMSPRSHSSCVTATMETKKRGLLGRKKPVHRKSIDSFGQRTSQYRGVSRHRWTGRYEAHLWDKSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHLNFPLKNYQVEIEEMKNMNRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGTNAVTNFDTSRYNVERIMASSSLFSREIARRNKEQKLTNAIECKEPTQNIDRIDPSEISNSNNVVWRSAFDDTMLLDRNTTIESIDRKLVTSCGYLNHLMGVETAMVKDSRKFKAHFSNASVSLPVMSSVWNDV 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11818737 11821213 + CmaCh01G017560.1 Cma01g01756 287449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01756 476 CDD AP2 189 256 IPR001471 GO:0003700|GO:0006355
Cma01g01756 476 PRINTS Ethylene responsive element binding protein signature 191 202 IPR001471 GO:0003700|GO:0006355
Cma01g01756 476 PRINTS Ethylene responsive element binding protein signature 332 352 IPR001471 GO:0003700|GO:0006355
Cma01g01756 476 Gene3D AP2/ERF domain 189 258 IPR036955 GO:0003700|GO:0006355
Cma01g01756 476 Gene3D AP2/ERF domain 292 352 IPR036955 GO:0003700|GO:0006355
Cma01g01756 476 SUPERFAMILY DNA-binding domain 291 351 IPR016177 GO:0003677
Cma01g01756 476 ProSiteProfiles AP2/ERF domain profile. 292 350 IPR001471 GO:0003700|GO:0006355
Cma01g01756 476 ProSiteProfiles AP2/ERF domain profile. 190 256 IPR001471 GO:0003700|GO:0006355
Cma01g01756 476 Pfam AP2 domain 190 248 IPR001471 GO:0003700|GO:0006355
Cma01g01756 476 Pfam AP2 domain 292 342 IPR001471 GO:0003700|GO:0006355
Cma01g01756 476 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 10 105 - -
Cma01g01756 476 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 132 472 - -
Cma01g01756 476 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 10 105 - -
Cma01g01756 476 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 132 472 - -
Cma01g01756 476 SUPERFAMILY DNA-binding domain 189 257 IPR016177 GO:0003677
Cma01g01756 476 CDD AP2 291 352 IPR001471 GO:0003700|GO:0006355
Cma01g01756 476 SMART rav1_2 190 262 IPR001471 GO:0003700|GO:0006355
Cma01g01756 476 SMART rav1_2 292 356 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01756 Cma-Chr1:11818737 Cma03g00890 Cma-Chr3:6544296 1.08E-159 dispersed
Cma17g00910 Cma-Chr17:6863250 Cma01g01756 Cma-Chr1:11818737 5.36E-10 dispersed
Cma01g01756 Cma-Chr1:11818737 Cma12g00614 Cma-Chr12:3226740 6.80E-156 wgd
Cma01g01756 Cma-Chr1:11818737 Cma09g00308 Cma-Chr9:1272511 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34361 PF00847 AP2 1.60E-13 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01756 K09285 - csv:101212143 656.751