Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma01g01757 | ATGGGTGATCTCGAAAATGACGAAATGGGTTTTCGAAATTCGAGTGATGGGTTACTGAATTGTCCATCTTCGGATAGAACTTCAGTAACAATGGCGATGGGTTCGTTTTATGGGTCTGGTTGGGATCCACTGGTTTCATTAGGTCAAAGCGAGAGCTTTGGAGCAGCTTCAATGGCTTCCTCACATCGAGATTTTTCAAATTCCTTTCCTATTGGTTTGGAGAATCATCATGGAGGAGGAAGTGGCACATCACAGACTGTTCAATATCCGACAGATTTAGAGATGGGTACGAAGTTACCATGTTTTGGGAGTGGGAATTATTCCGACATGTTCGGTTCTTTTGGTCTTGCTGATCAGATTCTTGGAGGGTGTTCTTCAAGTTACAGAAATGGAGGAACTGCCAACACTGCTCAAACATCACAAGAAACTTTACCACCACCATCTGGTGAAGAATCTGCCTTAGGATCACCAAATGGTAAAATCAGAAAACGAGCCCTTGATTCCGCCTTCCCATTTAGCTCAAATACGAAATCTGAAGGGAAATTGAAAAAAGATGTTTCTGGGGAAAGTTCGAGTACACAAGAAGAGAAAAATCCAGTAATGGAACAGAATTTACGAACTGGAAAACAAGCTAAAGAGAAGTCCAGTAACAGTGGAGAAGCTCCCAAGGAAAATTACATTCATGTGCGAGCTAGAAGAGGGCAAGCCACAAACAGCCATAGCCTTGCTGAGAGGGTGAGGAGGGAGAAGATTAGTGAACGGATGAGATTGCTTCAAGAACTTGTTCCTGGATGCAATAAGATTACTGGAAAAGCTGTAATGCTTGACGAAATTATAAACTATGTTCAATCACTGCAACAACAGGTTGAGTTTTTGTCGATGAAACTTGCTACTGTCAACCCCGACATGAACATCGATCTTGAGAGGATTTTATCCAAAGATATTTTCCAGGTACGAGGCAGCAATGGAAGCGTTCTAGGATTTGATCATCCTGGGATGAGCGCAGCTCCTCCGGTCGTCCCCGCTCACCGGATGTTTCAGTTTCAGGGGATGATGTCGAATATGGCATCCACATCCACATCCACGCAGTTTCCTTCTTTACCTCAGACGATGTTGGAAAGTGATATCCAAACTCTTCTCCAAATGGGGTTCGATTCGGGTTCGGCCATTGACAATTTGGGACCAAATGGGAGGTTGAAAGCAGAGCGCTAA | 1212 | 43.81 | MGDLENDEMGFRNSSDGLLNCPSSDRTSVTMAMGSFYGSGWDPLVSLGQSESFGAASMASSHRDFSNSFPIGLENHHGGGSGTSQTVQYPTDLEMGTKLPCFGSGNYSDMFGSFGLADQILGGCSSSYRNGGTANTAQTSQETLPPPSGEESALGSPNGKIRKRALDSAFPFSSNTKSEGKLKKDVSGESSSTQEEKNPVMEQNLRTGKQAKEKSSNSGEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDMNIDLERILSKDIFQVRGSNGSVLGFDHPGMSAAPPVVPAHRMFQFQGMMSNMASTSTSTQFPSLPQTMLESDIQTLLQMGFDSGSAIDNLGPNGRLKAER | 403 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 11826780 | 11829325 | + | CmaCh01G017570.1 | Cma01g01757 | 287450 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma01g01757 | 403 | MobiDBLite | consensus disorder prediction | 192 | 215 | - | - | |
| Cma01g01757 | 403 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 31 | 402 | IPR024097 | GO:0006355 | |
| Cma01g01757 | 403 | PANTHER | TRANSCRIPTION FACTOR BHLH FAMILY-RELATED | 31 | 402 | - | - | |
| Cma01g01757 | 403 | CDD | bHLH_AtBPE_like | 225 | 310 | - | - | |
| Cma01g01757 | 403 | SMART | finulus | 241 | 291 | IPR011598 | GO:0046983 | |
| Cma01g01757 | 403 | MobiDBLite | consensus disorder prediction | 132 | 224 | - | - | |
| Cma01g01757 | 403 | Pfam | Helix-loop-helix DNA-binding domain | 238 | 286 | IPR011598 | GO:0046983 | |
| Cma01g01757 | 403 | MobiDBLite | consensus disorder prediction | 132 | 147 | - | - | |
| Cma01g01757 | 403 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 233 | 301 | IPR036638 | GO:0046983 | |
| Cma01g01757 | 403 | Gene3D | - | 232 | 305 | IPR036638 | GO:0046983 | |
| Cma01g01757 | 403 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 235 | 285 | IPR011598 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma01g01757 | Cma-Chr1:11826780 | Cma04g01570 | Cma-Chr4:7972133 | 1.72E-61 | dispersed | |
| Cma01g01757 | Cma-Chr1:11826780 | Cma09g00309 | Cma-Chr9:1278151 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 34362 | PF00010 | HLH | 4.20E-06 | No_clan | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma01g01757 | - | - | cpep:111788194 | 775.778 |