Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01758 ATGGCTCCCTCGTTTGATTGGTGGGGAAAAGACACTCATAGAGGAACTCCTGTTGTTGTGAAGATGGAGAATCCAAATTGGTCGATGGTGGAGCTGGAAGGACCGTCGGAGGATGATTTTCTCATCGCCGGCGACTCGCCGGCGAGTCGGACTAGAGAGAAAGCCCGAGGCAAAAACGCTAAGCAACTAACGTGGGTTCTCCTCCTTAAGGCTCATAAGGCTGCCGGTTGTTTAACTTCCATTGGCTCTGCAATGGTGGACCTAGCCGCCGCCGTTAGACGCCGTGTTGCTTCTGGTCGGACTGATGCCGATGACGCCGACAATGACGTGTCTGTTGGAGGCAGAGTGAAAGAGAACCCCACCGTGAAAACGAGATTCTATTCTTGTATCAAAGTGTTTCTATGGCTGTCGGTGCTTTTGTTGGGTTTTGAGATTGCGGCGTTCTTCAAAGGCTGGCATTTTGATACTCCAAAGCTTCATTTGGATTATCTCTGGGCATCGCAGTGGGGCTTTAAAGGAGTTTTTGATTGGATTTACGCTCAATGGGTATTGATTCGAGTGGGTTATTTAGCTCCTCCTCTTCAGTTCTTAGCCAATGCCTGTATCATATTGTTCATCATTCAGAGCTTGGATCGTTTAATCTTATGTCTGGGTTGTTTCTGGATCCGATTCAAGAAAATCCAACCAGTTCTTAAACCTGGAGATTTAGACATTGAATCCGGCGAAAAGGGCTACTTCCCAATGGTTCTTGTGCAGATCCCCATGTGCAATGAAAAAGAGGTTTATCAGCAGTCAATCGCTGCTATCTGCAACTTGGACTGGCCTAGAACCAAGCTGCTAATTCAAGTTCTTGATGACTCTGATGACCCAACAACCCAATTGCTGATACAAGAAGAGGTTCATAAATGGCAGCAAGAGGGCGCCAACATTGTTTATCGTCATAGAATCATTAGAGATGGTTACAAGGCTGGCAACCTCAAATCCGCCATGAATTGTAGCTATGTTAAAGACTACGAATTCGTCGCGATCTTCGATGCCGATTTTCAACCCACACCTGATTTCCTTAAAAGAACTGTTCCTCATTTCAAGGATAATGAGGAGCTGGGGCTGGTTCAAGCAAGATGGTCATTTGTGAACAAGGATGAGAATTTACTGACCAGGCTGCAGAACGTTAATTTAGCTTTCCATTTTGAAGTAGAGCAGCAAGTAAACAGTGTGTTCCTCAACTTCTTTGGATTCAATGGCACTGCTGGTGTGTGGAGGATCAAAGCCCTCGAGGACGCCGGTGGGTGGTTGGAAAGGACCACGGTCGAGGACATGGATATCGCGGTCCGTGCTCATCTTCATGGATGGAAATTCATATTCCTAAACGACGTCGAGTGCCAATGTGAGCTACCAGAATCTTATGAAGCTTATAGAAAACAACAACATAGATGGCATTCTGGTCCAATGCAATTGTTTCGTCTTTGTCTGCCTGCTATTATTCGATCAAAGATTAGTATATGGAAGAAGTTCAACCTGATCTTCCTCTTCTTTTTGCTCAGAAAATTGATATTGCCCTTCTATTCTTTCACACTTTTCTGCATAATTCTCCCAATGACAATGTTCGTTCCTGAAGCCGAGCTACCCGCGTGGGTCGTTTGCTATATCCCGGCCACGATGTCGTTTCTAAACATCCTACCTGCCCCAAAATCCTTCCCTTTCATTGTCCCTTACCTCCTTTTTGAAAACACCATGTCAGTTACCAAGTTCAATGCCATGATCTCAGGGCTCTTCCAGCTTGGTAGCGCCTACGAATGGGTTGTCACGAAGAAATCGGGTCGGTCCTCAGAAGGTGATCTTTTGTCGTTGGTAGAGAGAGAGCAAAAGCATCAAAGAGGGGCATCGGCGCCCAACTTAGAAGAGATGAAGGAAGAGCTTGAGAAACAGGAAAAGAAAGCTTCTTTGCGGAAGAAGCATAACCGAATATATACAAAAGAGCTGGCATTGGCTTTCCTTCTCTTAACTGCATCAGCACGGAGTCTTCTGTCTGCTCAAGGGATCCATTTCTACTTCTTGCTATTCCAGGGGATCTCGTTCCTGCTCGTCGGGTTGGATTTGATCGGCGAACAAATTGGTTGA 2121 45.92 MAPSFDWWGKDTHRGTPVVVKMENPNWSMVELEGPSEDDFLIAGDSPASRTREKARGKNAKQLTWVLLLKAHKAAGCLTSIGSAMVDLAAAVRRRVASGRTDADDADNDVSVGGRVKENPTVKTRFYSCIKVFLWLSVLLLGFEIAAFFKGWHFDTPKLHLDYLWASQWGFKGVFDWIYAQWVLIRVGYLAPPLQFLANACIILFIIQSLDRLILCLGCFWIRFKKIQPVLKPGDLDIESGEKGYFPMVLVQIPMCNEKEVYQQSIAAICNLDWPRTKLLIQVLDDSDDPTTQLLIQEEVHKWQQEGANIVYRHRIIRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPTPDFLKRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQNVNLAFHFEVEQQVNSVFLNFFGFNGTAGVWRIKALEDAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPAIIRSKISIWKKFNLIFLFFLLRKLILPFYSFTLFCIILPMTMFVPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLLSLVEREQKHQRGASAPNLEEMKEELEKQEKKASLRKKHNRIYTKELALAFLLLTASARSLLSAQGIHFYFLLFQGISFLLVGLDLIGEQIG 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11830948 11833435 - CmaCh01G017580.1 Cma01g01758 287451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01758 706 Coils Coil 630 653 - -
Cma01g01758 706 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 240 464 IPR029044 -
Cma01g01758 706 Pfam Glycosyl transferase family group 2 341 536 IPR001173 -
Cma01g01758 706 SUPERFAMILY Nucleotide-diphospho-sugar transferases 249 527 IPR029044 -
Cma01g01758 706 PANTHER - 6 705 - -
Cma01g01758 706 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 12-RELATED 6 705 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01758 Cma12g00615 CCT
Cma01g01758 Cma09g00311 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01758 Cma-Chr1:11830948 Cma09g00534 Cma-Chr9:2381792 0 dispersed
Cma01g01758 Cma-Chr1:11830948 Cma12g00615 Cma-Chr12:3241272 0 wgd
Cma01g01758 Cma-Chr1:11830948 Cma09g00311 Cma-Chr9:1283079 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01758 - - csv:101204215 1330.47