Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01763 ATGGGAAGAGCTCCTTGCTGTGATAAAGCCAACGTGAAGAAGGGCCCGTGGTCGCCCGAGGAAGATGCAAAACTCAAATCCTATATCGAGCAGCATAGCACGGGAGGAAACTGGATCGCGCTACCTCAAAAAATTGGTCTTAAGCGATGTGGGAAAAGTTGCCGACTCCGATGGTTGAACTACCTTCGTCCAAATATCAAACATGGGGATTTCTCAGAAGAAGAAGATAGAATAATTTGTAGCCTTTATATTAGCATTGGAAGCAGGTGGTCGATTATTGCAGCTCAATTACCGGGAAGAACGGATAATGATATAAAGAACTATTGGAACACGAGGTTGAAGAAGAAACTATTTGGCAAGCAACAACTGATGAGAAGAGGAAGAAAAATCAAATCCGAAATTGGAAATTCCATGGCTATTGCTTTTGACAACCATCTTTATAATAACCAATCGCCTTTCTTGCCGGAGTTAACATCGGCGCTCAATTCCCCCCCGCCGCCGCCGCCGTGCGCAAATTACCAATCGCTTCAATTCCCTTCTAATTCTCAGCAACTCTTCGGCCACACCCCCGGCGGCGACTTGAGCAGAACAGACGGTTTCCAATTTGGAACAGACGGGGTCCCGGGTCTACCAATCCCAAGCCGCCACGTAGGTGAATTGGAGAAGGTCGTGTATAGCAATACGGCGTCGTTTGATAATGGTAATGTCTTGATGAACGAGTTGGATTGGGGGGAAATGAGTTCTTTGATTTCTGCTCCTTTATATCCTTCAATGGCTCATGATTTGATGATGGGTTCTTCTTTTTTAGAGCAGCAAAAACAATAG 825 45.45 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHSTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGDFSEEEDRIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLFGKQQLMRRGRKIKSEIGNSMAIAFDNHLYNNQSPFLPELTSALNSPPPPPPCANYQSLQFPSNSQQLFGHTPGGDLSRTDGFQFGTDGVPGLPIPSRHVGELEKVVYSNTASFDNGNVLMNELDWGEMSSLISAPLYPSMAHDLMMGSSFLEQQKQ 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11853801 11855048 - CmaCh01G017630.1 Cma01g01763 287456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01763 274 CDD SANT 71 113 IPR001005 -
Cma01g01763 274 Gene3D - 7 68 - -
Cma01g01763 274 CDD SANT 16 62 IPR001005 -
Cma01g01763 274 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Cma01g01763 274 SMART sant 67 115 IPR001005 -
Cma01g01763 274 SMART sant 13 64 IPR001005 -
Cma01g01763 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Cma01g01763 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Cma01g01763 274 PANTHER OS09G0431300 PROTEIN 1 131 - -
Cma01g01763 274 Gene3D - 69 135 - -
Cma01g01763 274 PANTHER OS09G0431300 PROTEIN 1 131 - -
Cma01g01763 274 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Cma01g01763 274 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Cma01g01763 274 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Cma01g01763 274 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01763 Cma12g00620 CCT
Cma01g01763 Cma12g00620 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01763 Cma-Chr1:11853801 Cma12g01006 Cma-Chr12:8035974 1.98E-78 dispersed
Cma06g00395 Cma-Chr6:1833449 Cma01g01763 Cma-Chr1:11853801 4.61E-74 dispersed
Cma01g01763 Cma-Chr1:11853801 Cma12g00620 Cma-Chr12:3265537 6.27E-84 wgd
Cma01g01763 Cma-Chr1:11853801 Cma03g00883 Cma-Chr3:6503496 1.68E-82 wgd
Cma01g01763 Cma-Chr1:11853801 Cma05g00116 Cma-Chr5:503339 2.33E-83 wgd
Cma01g01763 Cma-Chr1:11853801 Cma07g00624 Cma-Chr7:2704789 3.44E-82 wgd
Cma01g01763 Cma-Chr1:11853801 Cma09g00320 Cma-Chr9:1313985 2.21E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34363 PF00249 Myb_DNA-binding 7.80E-13 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01763 K09422 - csv:101212385 409.453