Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01764 ATGGCCGGTGTAAAGAAGAAGAAGCAGCAGGTTTTGAAGTTTGATGACATTATTATGCCTTCTCTATCGTTGGGGTTGTCGATTGTTGTCGAATCCCCCAACGAGTTCATCCAGCTGAGTTCTTCGGGAAGTCCAGTGTCGTCGTTTTCAAATTCATCGGGGTATAAGAGGGAGAGAGACGGCTGCGGCGGTGAGGAGGCGGAGGAAGACGAAGATGGAAGTCCGAGGAAGAAACTTAGATTCACTAAAGAACAATCCGCCAATTTAGAAGAAAGCTTCAAAGAACACTCAACTTTCAGTCCTAAGCAAAAGCAGGAATTGGCAAGAAATTTAAAGCTAAGGGCAAGACAAGTGGAAGTATGGTTTCAAAATAGAAGAGCCAGAACCAAGCTGAAGCAAACAGAAATGGACTGTGAATTAATGAAGAAATGCTGTGAAAAGCTGAAAGAAGAGACCACAAGGCTTCAAAAGGAGCTTCAAGAGCTCAAATCACTCAAATTAACAGCTCCGCCGTTCGCCACCCTCACCGTTTGCCCTTCCTGTTAG 546 44.87 MAGVKKKKQQVLKFDDIIMPSLSLGLSIVVESPNEFIQLSSSGSPVSSFSNSSGYKRERDGCGGEEAEEDEDGSPRKKLRFTKEQSANLEESFKEHSTFSPKQKQELARNLKLRARQVEVWFQNRRARTKLKQTEMDCELMKKCCEKLKEETTRLQKELQELKSLKLTAPPFATLTVCPSC 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11857318 11858247 + CmaCh01G017640.1 Cma01g01764 287457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01764 181 CDD homeodomain 75 133 IPR001356 GO:0003677
Cma01g01764 181 ProSitePatterns 'Homeobox' domain signature. 107 130 IPR017970 GO:0000981|GO:0006355
Cma01g01764 181 Gene3D - 68 138 - -
Cma01g01764 181 Pfam Homeobox associated leucine zipper 132 165 IPR003106 GO:0006355|GO:0043565
Cma01g01764 181 MobiDBLite consensus disorder prediction 38 55 - -
Cma01g01764 181 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 38 181 - -
Cma01g01764 181 SMART HOX_1 74 136 IPR001356 GO:0003677
Cma01g01764 181 Pfam Homeodomain 76 130 IPR001356 GO:0003677
Cma01g01764 181 PANTHER - 38 181 - -
Cma01g01764 181 Coils Coil 131 168 - -
Cma01g01764 181 SUPERFAMILY Homeodomain-like 73 140 IPR009057 -
Cma01g01764 181 MobiDBLite consensus disorder prediction 38 104 - -
Cma01g01764 181 ProSiteProfiles 'Homeobox' domain profile. 72 132 IPR001356 GO:0003677
Cma01g01764 181 MobiDBLite consensus disorder prediction 70 104 - -
Cma01g01764 181 SMART halz 132 175 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01764 Cma-Chr1:11857318 Cma07g00621 Cma-Chr7:2669609 2.00E-57 dispersed
Cma01g01764 Cma-Chr1:11857318 Cma09g00321 Cma-Chr9:1324538 4.68E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34364 PF00046 Homeodomain 1.20E-16 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01764 K09338 - csv:101212868 237.654