Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01765 ATGGAGGATTATAATAATCATCTAAACGAGAACTCAAATCCGAGAGGCAATTTCTTGTACGCATCATCCAATTCTTCATCTGGTAATTATGGAAGATCAAGCAATCCGACGGCTCAGATGGCTGCTCATACGTTTCATCTTCAACAAGGAGCTGATTGTTTTCAAGCCGATCAATCGCACCCGATCGTCAAGTCGGAAGCCAGTACTTCCCACCACCAGCTCCTCAAATTCCACTATCCTTTAGGACAGCCGCCGCCGCCGACGACGACGACGACATGTCGGCCTGACGATGACGGCGGCGTTGATGTTGAAGACATTAAAGCCAAAATCGTGGCTCATCCTCAATATTCCAGCCTCCTTGAAGCCTACATGGAATGTCAGAAGGTGGGTGCTCCGCCGCAAGTGGTGGAGCAGCTGGTGGCTGCCCGGCAAGAATTTGAAGCACGGCAGCGATCTTCCATGGTTTCTGGAGATTCCACGAAGGATCCAGAACTTGATCAATTCATGGAAGCTTATTACGACATGTTGGTGAAATATCGGGAGGAACTTACAAGGCCGGTTCAAGAAGCCATGGATTTCATGCGCAGGATCGAATCTCAGCTCAGTTCTCTCTGTAATGGCCCAGTTCGGATCTTCAATTCCGATGAGAAGTGTGAAGGTATTGGGTCGTCAGAGGAGGAACAAGAGAATAGCGGGGGAGAAACCGAGCTACCAGAGATCGACCCGCGAGCGGAAGACAGGGAATTGAAGAACCACCTACTGAGGAAGTATAGTGGTTTCCTGAGCAGTCTAAAGCAAGAACTGTCTAAGAAAAAGAAGAAAGGGAAGCTCCCAAAAGATGCAAGGCAGAAGCTTCTTAATTGGTGGGAGTTGCATTACAAATGGCCATATCCTTCAGAGACAGAGAAGGTAGCATTGGCTGAATCCACTGGATTGGATCAGAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCCTCTGAAGATATGCAGTTCATGGTGATGGATGGCCTTCATCCTTCCAATGCTGCGCTCTACCTCGACGGTCATTACATGACCGATGGCCATTATCGACTCGGACCGTGA 1101 48.23 MEDYNNHLNENSNPRGNFLYASSNSSSGNYGRSSNPTAQMAAHTFHLQQGADCFQADQSHPIVKSEASTSHHQLLKFHYPLGQPPPPTTTTTCRPDDDGGVDVEDIKAKIVAHPQYSSLLEAYMECQKVGAPPQVVEQLVAARQEFEARQRSSMVSGDSTKDPELDQFMEAYYDMLVKYREELTRPVQEAMDFMRRIESQLSSLCNGPVRIFNSDEKCEGIGSSEEEQENSGGETELPEIDPRAEDRELKNHLLRKYSGFLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPSNAALYLDGHYMTDGHYRLGP 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11858719 11861965 - CmaCh01G017650.1 Cma01g01765 287458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01765 366 MobiDBLite consensus disorder prediction 220 243 - -
Cma01g01765 366 Pfam Homeobox KN domain 288 327 IPR008422 GO:0003677|GO:0006355
Cma01g01765 366 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 358 - -
Cma01g01765 366 SUPERFAMILY Homeodomain-like 269 344 IPR009057 -
Cma01g01765 366 SMART KNOX2_2 155 206 IPR005541 GO:0003677|GO:0005634
Cma01g01765 366 Pfam KNOX1 domain 106 147 IPR005540 GO:0003677|GO:0005634
Cma01g01765 366 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 358 - -
Cma01g01765 366 ProSitePatterns 'Homeobox' domain signature. 306 329 IPR017970 GO:0000981|GO:0006355
Cma01g01765 366 SMART HOX_1 270 335 IPR001356 GO:0003677
Cma01g01765 366 CDD homeodomain 280 332 IPR001356 GO:0003677
Cma01g01765 366 MobiDBLite consensus disorder prediction 7 36 - -
Cma01g01765 366 ProSiteProfiles 'Homeobox' domain profile. 268 331 IPR001356 GO:0003677
Cma01g01765 366 MobiDBLite consensus disorder prediction 1 36 - -
Cma01g01765 366 Gene3D - 273 335 - -
Cma01g01765 366 ProSiteProfiles ELK domain profile. 248 268 IPR005539 GO:0003677
Cma01g01765 366 SMART KNOX1_2 104 148 IPR005540 GO:0003677|GO:0005634
Cma01g01765 366 Pfam ELK domain 248 269 IPR005539 GO:0003677
Cma01g01765 366 SMART ELK_2 248 269 IPR005539 GO:0003677
Cma01g01765 366 Pfam KNOX2 domain 160 205 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01765 Cma-Chr1:11858719 Cma05g00114 Cma-Chr5:493551 2.45E-118 dispersed
Cma01g01765 Cma-Chr1:11858719 Cma12g00621 Cma-Chr12:3272455 1.15E-110 wgd
Cma01g01765 Cma-Chr1:11858719 Cma09g00322 Cma-Chr9:1326533 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34365 PF03791 KNOX2 1.60E-25 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01765 - - csv:101213104 587.03