Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01767 ATGACCGGAATTTCCTCGCCGGTCTTCATCGGCGCCGGGGTTGACTTCTCTTCTGCCATTCACCGTTACCTTCCCTCTGCGGCTGATTCTGACGAAGTGGACGCGGCGGACTCGCCGGTTAATGGTTTTTCCTGTGACGATTTTCGGATGTTTGAGTTCAAAATCCGGAGATGCCCACGTAGTCGGTCGCATGATTGGACTGAGTGTCCGTATGCCCATCCCGGCGAGAAGGCTCGCCGGAGAGATCCGAGGATGTATCAATATTCCGGCACGGCTTGTCCGGAATTTCGGAGAGGGAATTGCAAGAAAGGGGATTCTTGCTCACTTGCTCACGGGATTTTCGAGTGTTGGCTCCATCCCGCTCGGTATCGGACTCAACCCTGTAAGGATGGATTGGCCTGCCGCCGACGTGTCTGTTTTTTCGCCCACACGACAGGGCAGCTTCGGGTTCTGTCACAGCAGAGCCCGAGAACTCCGGTTTCGGGCGACTCACTCGCATTTGATTCCTATTTTGCCAAGGGGTCATCTCTGACCTCACCCACTTCAATTCTATCAACGCCGCCGGTCTCCTCGCCGTCCGATTCACCTCCTATGTCGCCGAATTGCCCCCAACTCGGCGGCGGGTCGTTTAATTCGATGAATGGGCTCGTTTTGTCCATTCGTAACCTTCAAATGGGGGAAATGAAAGCAACCCCTCAATGGGGAGTTCAATTGGGACAAAATTTGCATTCTCCCTCCGGCTCTGGTTTCTACAGCTCATCGTCGACTCCGACCACCGGGAATTACGAATTATGGGGGAAGAATTATGAAGAAGAACCTGCAATGGAAAGAGTGGAATCTGGGAGAGACCTGAGAGCTAAAATGTATGCGAAACTCAGCAAAGACAACTCAGTGGCGCAGCCATTGACACCCGATGTCGACTGGGTCTCGGAGCTACTGATGTGGACAGGGTAA 954 53.46 MTGISSPVFIGAGVDFSSAIHRYLPSAADSDEVDAADSPVNGFSCDDFRMFEFKIRRCPRSRSHDWTECPYAHPGEKARRRDPRMYQYSGTACPEFRRGNCKKGDSCSLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHTTGQLRVLSQQSPRTPVSGDSLAFDSYFAKGSSLTSPTSILSTPPVSSPSDSPPMSPNCPQLGGGSFNSMNGLVLSIRNLQMGEMKATPQWGVQLGQNLHSPSGSGFYSSSSTPTTGNYELWGKNYEEEPAMERVESGRDLRAKMYAKLSKDNSVAQPLTPDVDWVSELLMWTG 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11875855 11876808 + CmaCh01G017670.1 Cma01g01767 287460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01767 317 SMART c3hfinal6 122 145 IPR000571 GO:0046872
Cma01g01767 317 SMART c3hfinal6 87 113 IPR000571 GO:0046872
Cma01g01767 317 Gene3D - 83 156 - -
Cma01g01767 317 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 17 313 - -
Cma01g01767 317 MobiDBLite consensus disorder prediction 177 206 - -
Cma01g01767 317 ProSiteProfiles Zinc finger C3H1-type profile. 87 114 IPR000571 GO:0046872
Cma01g01767 317 PANTHER UNKEMPT FAMILY MEMBER 17 313 IPR045234 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01767 Cma09g00326 CCT
Cma01g01767 Cma09g00326 ECH
Cma01g01767 Cma05g00112 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01767 Cma-Chr1:11875855 Cma11g00671 Cma-Chr11:3249244 2.60E-97 dispersed
Cma01g01767 Cma-Chr1:11875855 Cma10g00690 Cma-Chr10:3123164 4.51E-101 wgd
Cma01g01767 Cma-Chr1:11875855 Cma12g00622 Cma-Chr12:3290026 6.54E-96 wgd
Cma01g01767 Cma-Chr1:11875855 Cma09g00326 Cma-Chr9:1342960 1.24E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34366 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01767 - - csv:101205433 476.863