Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01771 ATGCTTGACGTTCTGTTATGCTCTGAAATGGATAATCTATCTCAGTCTTCAGGCGGACAGTTTCGACCAAATATCCCAGCACAACCAGGCCAGACGTTCATTTCCTCATCTGCCCCACAGTTCCAGTCAGCAGGGCAGAATATATCTTCTTCAAATGTTGGAATTCCAGCTGGTCAAGTCCAGCCACATCAGTATCCTCAATCAGTGCCACAGTTTGTGCCAAGGCCAAGCCATCGAGGCTATATCACTCCTTTGTCCCAGGGTATTCGAATGCCTTATGTTCCGACAAGGTCTCTTACTTCTGTTCCACCTCAGAGTCAGCAAAACGTGCCTGCACCAAATAATCAAATGCATGGTCTGGGTTCTCATGGACTATCTATTTCTTCACCATATACTCCAATGTCACAAATGCATGTACCTGTTGGAGTTGGTAAGAGCGAACCTTTGATGTCTTCTGTCAGCCAGGCTACAAACCCAGTCTCACAGATTGAGCAAGCTAACCAGCATTCTTCAGTTTCTACCGTAAACCTAGCTGCTAATGTTCCTGTCTTCAATCATCCATCTGATTGGCAAGAGCATGCATCAGCTGATGGAAAAAGATACTATTACAACAAAAAAACCAAACAGTCCAGTTGGGAAAAGCCATTGGAACTTATGACACCACTTGAGAGAGCTGATGCATCAACTGTGTGGATGGAATTTACATCTCCAGATGGAAGAAAGTACTATTACAATAAGGTGACAAAAGAATCAAAGTGGACCATGCCAGAAGAACTGAAGTTGGCTCGCGAGCAGGCTCAGAAAGAATCTGTCCAAGGAACAGAAACAGATATGGCTGTTACAACGTCTCAACCTACACCTATTGTTGGTCTTTTCCATGCTGAAACGCCGGCAATTTCTACCATTAGCTCCAGCATTTCTCCAACTGTGTCTGGGGTTGCATTGAGTCCAGTTCCAGCTGCTCTTTTTGTTTCTGGTCCTCCTGCTGTGGTCCATGCCAATGCTTCGTCAATGACTACTTTTGAAAGCCTTGCATCTCAAGATGTAAAAAATCCTGTTGATGAAACTTCTACGGAGGACATTGAGGAAGCAAGGAAGAGAATGGCAGTTGCAGGAAAAGTTAATGAGACTGTCTTAGAGGAAAAATATGCTGACGATGAACCATTGGTATTCGCCAACAAGCTGGAGGCAAAGAGTGCATTTAAAGCGCTTCTGGAATCTGTAAATGTTCAGTCTGATTGGACGTGGGAGCAGGCTATGCGAGAAATAATTAATGACAAAAGATATGGCGCCTTGAAAACTCTTGGTGAGCGGAAGCAAGCTTTCCATGAGTATTTAGGACATAGAAAAAAGTTGGATGCAGAAGAAAGACGCATAAGACAGAAAAAAGCTCGTGAGGAATTCATCAAGATGTTGGATGAGTCCAAGGAACTCACATCATCTACCAGATGGAGCAAAGCTGTTAGTATGTTTGAGAATGATGAACGGTTCAAAGCCGTTGAACGTTCTAGAGATCGGGAGGATCTTTTTGAAACCTGCATAGTGGAACTTGAGAGGAAGGAAAAAGAAAGGGCTGCAGAGGAGCACAAGAAAAATATTACTGAATATAGGGAATTTCTCGAGTCTTGGGATTACATAAAGGTGAGTAGCAAATGGCGGAAAGTACAAGATCGATTGGAAGTTGATGAGAGATGCTTATACCTTGAGAAACTTGATCGCTTGCTTATTTTCCAGGACTATATACGTGAGTTGGAAAAGGAGGAAGAGGAACAGAAGAAGATACAAAAGGGACGTTTGCGAAGAATTGAAAGAAAAAACCGCGATGAGTTCCGCCAACTCATGGAAGAACACATTATTGCTGGTGTTCTTACAGCTAAGACTTTTTGGCGTGATTACTGTTTGAAGGTTAAGGAGTTGCCTCAGTATCAAGCTGTTGCTTCAAATATATCTGGCTCAACACCAAAGGACTTGTTTGAGGATGTTCTGGCGGAATTAAAGACTAAGTATCACAAAGAAAAGGCTCAGATAAAAGATGTGATGAAGGCAGCGAAGGTTACCATCACTTCATCATGGACATTTGATGACCTTAAGGCTGTCCTTGAAGAGGGTGCTCCTCTTGCACTTTCAGATATAAATTTTAAGCTTGTATATGAGGATTTACTAGAAAGAGCCAAAGCAAAGGAGGAGAAAGAAGCCAAAAGGCGTCAACGTTTGGCTGATGACTTCTCAAGACTGCTTCAGTTATTCAAGGAGATTTCAGCTTCTTCCAACTGGGAGGATAGCAAACAGCTTTTTGAAGAGAGTGAAGACTACAGATCAATTGGGGAAGAGACCTTCGCGAAGGAAGTTTTTGAGGAATACGTAGTGCATTTACAAGAAAAGGCAAAAGAAAAGGAACGCAAGGGTGAGGAGGAGAAGGCTAAAAAGGAAAAAGAATGCGAGGAAAAGGAGAAAGAGCGAAAGGAGAAGGAAAGAGAACCTGAAAAAGAAAAGGGACGTGTTAAGAAGGATGAAACTGATAGCGAAAATATAGATGCAAACGAAACTCGAGAAAAGAAAAGGGAAAAAAACAAAGACAGGAAACATCGGAAGCGGCATCATAGTGCCACTGATGATGGTGGTTCTAATAAAGATGAGAGAGAGGAGTCTAAGAAGTTTTGCAAACGTGGCAGTGACCGAAAAAAGTCAAGGAAGCACGCATATTCACCTGAATCAGACAGTGAGAGTAGGCACAGAAGACACAAGAGAGAACATCGAGATGGTTCATGTAGAAATGGCGGACATGATGAACTTGAAGATGGGGAGCTTGGAGAGGATGGGGAAATTCAATAG 2832 42.73 MLDVLLCSEMDNLSQSSGGQFRPNIPAQPGQTFISSSAPQFQSAGQNISSSNVGIPAGQVQPHQYPQSVPQFVPRPSHRGYITPLSQGIRMPYVPTRSLTSVPPQSQQNVPAPNNQMHGLGSHGLSISSPYTPMSQMHVPVGVGKSEPLMSSVSQATNPVSQIEQANQHSSVSTVNLAANVPVFNHPSDWQEHASADGKRYYYNKKTKQSSWEKPLELMTPLERADASTVWMEFTSPDGRKYYYNKVTKESKWTMPEELKLAREQAQKESVQGTETDMAVTTSQPTPIVGLFHAETPAISTISSSISPTVSGVALSPVPAALFVSGPPAVVHANASSMTTFESLASQDVKNPVDETSTEDIEEARKRMAVAGKVNETVLEEKYADDEPLVFANKLEAKSAFKALLESVNVQSDWTWEQAMREIINDKRYGALKTLGERKQAFHEYLGHRKKLDAEERRIRQKKAREEFIKMLDESKELTSSTRWSKAVSMFENDERFKAVERSRDREDLFETCIVELERKEKERAAEEHKKNITEYREFLESWDYIKVSSKWRKVQDRLEVDERCLYLEKLDRLLIFQDYIRELEKEEEEQKKIQKGRLRRIERKNRDEFRQLMEEHIIAGVLTAKTFWRDYCLKVKELPQYQAVASNISGSTPKDLFEDVLAELKTKYHKEKAQIKDVMKAAKVTITSSWTFDDLKAVLEEGAPLALSDINFKLVYEDLLERAKAKEEKEAKRRQRLADDFSRLLQLFKEISASSNWEDSKQLFEESEDYRSIGEETFAKEVFEEYVVHLQEKAKEKERKGEEEKAKKEKECEEKEKERKEKEREPEKEKGRVKKDETDSENIDANETREKKREKNKDRKHRKRHHSATDDGGSNKDEREESKKFCKRGSDRKKSRKHAYSPESDSESRHRRHKREHRDGSCRNGGHDELEDGELGEDGEIQ 943
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11880975 11892452 + CmaCh01G017710.1 Cma01g01771 287464

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01771 943 SMART ww_5 185 217 IPR001202 GO:0005515
Cma01g01771 943 SMART ww_5 226 258 IPR001202 GO:0005515
Cma01g01771 943 ProSiteProfiles FF domain profile. 601 664 IPR002713 -
Cma01g01771 943 Coils Coil 721 741 - -
Cma01g01771 943 Pfam WW domain 231 256 IPR001202 GO:0005515
Cma01g01771 943 Pfam WW domain 187 215 IPR001202 GO:0005515
Cma01g01771 943 ProSiteProfiles WW/rsp5/WWP domain profile. 184 217 IPR001202 GO:0005515
Cma01g01771 943 SUPERFAMILY FF domain 598 670 IPR036517 -
Cma01g01771 943 MobiDBLite consensus disorder prediction 866 889 - -
Cma01g01771 943 MobiDBLite consensus disorder prediction 794 943 - -
Cma01g01771 943 ProSiteProfiles FF domain profile. 461 516 IPR002713 -
Cma01g01771 943 MobiDBLite consensus disorder prediction 99 135 - -
Cma01g01771 943 Pfam FF domain 605 660 IPR002713 -
Cma01g01771 943 Pfam FF domain 463 511 IPR002713 -
Cma01g01771 943 Pfam FF domain 396 445 IPR002713 -
Cma01g01771 943 SMART FF_2 529 583 IPR002713 -
Cma01g01771 943 SMART FF_2 461 516 IPR002713 -
Cma01g01771 943 SMART FF_2 735 790 IPR002713 -
Cma01g01771 943 SMART FF_2 394 448 IPR002713 -
Cma01g01771 943 SMART FF_2 603 664 IPR002713 -
Cma01g01771 943 MobiDBLite consensus disorder prediction 794 855 - -
Cma01g01771 943 Gene3D FF domain 711 802 IPR036517 -
Cma01g01771 943 Coils Coil 519 539 - -
Cma01g01771 943 MobiDBLite consensus disorder prediction 99 146 - -
Cma01g01771 943 Coils Coil 577 605 - -
Cma01g01771 943 ProSiteProfiles FF domain profile. 394 448 IPR002713 -
Cma01g01771 943 SUPERFAMILY FF domain 386 447 IPR036517 -
Cma01g01771 943 Coils Coil 781 831 - -
Cma01g01771 943 CDD WW 231 258 IPR001202 GO:0005515
Cma01g01771 943 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 15 937 - -
Cma01g01771 943 Gene3D FF domain 394 449 IPR036517 -
Cma01g01771 943 CDD WW 187 217 IPR001202 GO:0005515
Cma01g01771 943 ProSiteProfiles FF domain profile. 529 583 IPR002713 -
Cma01g01771 943 SUPERFAMILY FF domain 521 590 IPR036517 -
Cma01g01771 943 ProSitePatterns WW/rsp5/WWP domain signature. 190 215 IPR001202 GO:0005515
Cma01g01771 943 SUPERFAMILY WW domain 189 223 IPR036020 GO:0005515
Cma01g01771 943 Gene3D - 165 226 - -
Cma01g01771 943 Gene3D FF domain 594 675 IPR036517 -
Cma01g01771 943 Gene3D FF domain 524 593 IPR036517 -
Cma01g01771 943 Gene3D FF domain 450 523 IPR036517 -
Cma01g01771 943 Gene3D - 227 272 - -
Cma01g01771 943 ProSiteProfiles WW/rsp5/WWP domain profile. 225 258 IPR001202 GO:0005515
Cma01g01771 943 SUPERFAMILY WW domain 230 263 IPR036020 GO:0005515
Cma01g01771 943 MobiDBLite consensus disorder prediction 897 913 - -
Cma01g01771 943 SUPERFAMILY FF domain 736 797 IPR036517 -
Cma01g01771 943 Coils Coil 662 682 - -
Cma01g01771 943 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 15 937 IPR039726 GO:0045292
Cma01g01771 943 SUPERFAMILY FF domain 453 523 IPR036517 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01771 K12821 PRPF40, PRP40; pre-mRNA-processing factor 40 - csv:101203479 1349.73
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01771 Cma09g00307 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01771 Cma-Chr1:11880975 Cma08g01286 Cma-Chr8:7784288 1.14E-07 dispersed
Cma14g00527 Cma-Chr14:2612308 Cma01g01771 Cma-Chr1:11880975 2.74E-06 transposed
Cma17g00625 Cma-Chr17:5324071 Cma01g01771 Cma-Chr1:11880975 1.82E-35 transposed
Cma01g01771 Cma-Chr1:11880975 Cma04g00435 Cma-Chr4:2221369 0 wgd
Cma01g01771 Cma-Chr1:11880975 Cma09g00307 Cma-Chr9:1259927 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g614 . Blo12g00995 . Bda03g00163 . Bpe04g00145 . . . . Cma01g01771 Cma09g00307 Car01g01380 . . Cpe06g00216 . . . . . . . . . . . . . . . . . Cone17ag0900 Cone20ag0242 Lsi04g01460 Csa04g02500 . . . . . . . Bpe05g00461 . . Sed13g1825 Cmo01g01829 Cmo09g00308 . . . Car09g00259 . Cpe02g00234 Bhi09g03198 Tan01g4668 Cmetu07g0441 . Hepe01g1848 Mch11g0381 . . . . . . . . . . Chy07g00208 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007062 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01771 Cma_Chr01 FPKM 2.175 2.183932 3.177289 3.069243 4.473913 3.595371 3.990449 3.129426 3.838274 2.981694